From: Regulatory elements of Caenorhabditis elegans ribosomal protein genes
Comparison | Upstreams containing first motif only | Upstreams containing second motif only | Upstreams containing neither motif | Intersection (upstreams containing both motifs) | P-value | Expected intersection | Intersection/ Expected intersection | Notes |
---|---|---|---|---|---|---|---|---|
12-0 and 12-5 | 502 | 525 | 19794 | 250 | 8.2E-178 | 28 | 9.04 | Includes 12-0 |
A-rich and TATAAA | 11261 | 1251 | 651 | 7908 | 1.4E-93 | 8332 | 0.95 | Anti-occurrence |
12-0 and 12-11 | 684 | 315 | 20004 | 68 | 1.9E-28 | 14 | 4.97 | Includes 12-0 |
12-11 and 12-5 | 328 | 720 | 19968 | 55 | 3.9E-18 | 14 | 3.90 | |
12-5 and AT-rich | 411 | 6859 | 13437 | 364 | 1.3E-13 | 266 | 1.37 | |
12-0 and TTTAGG | 664 | 1195 | 19124 | 88 | 3.4E-09 | 46 | 1.92 | Includes 12-0 |
12-0 and Trans-splice | 575 | 3174 | 17145 | 177 | 3.5E-08 | 120 | 1.48 | Includes 12-0 |
12-0 and AT-rich | 423 | 6894 | 13425 | 329 | 4.9E-08 | 258 | 1.28 | Includes 12-0 |
12-5 and Trans-splice | 596 | 3172 | 17124 | 179 | 1.0E-07 | 123 | 1.45 | |
AT-rich and Trans-splice | 5951 | 2079 | 11769 | 1272 | 1.27E-06 | 1149 | 1.11 | |
12-0 and 12-18 | 716 | 380 | 19939 | 36 | 1.2E-06 | 15 | 2.42 | Includes 12-0 |
TTTAGG and Trans-splice | 1017 | 3085 | 16703 | 266 | 2.2E-06 | 204 | 1.30 | |
AT-rich and TTTAGG | 6707 | 767 | 13081 | 516 | 5.2E-06 | 440 | 1.17 | |
A-rich and AT-rich | 12678 | 732 | 1170 | 6491 | 6.2E-05 | 6571 | 0.99 | Anti-occurrence |
12-5 and TTTAGG | 701 | 1209 | 19087 | 74 | 1.2E-04 | 47 | 1.57 | |
12-18 and 12-5 | 385 | 744 | 19911 | 31 | 1.9E-04 | 15 | 2.03 |