Table 2 Comparison of reference assembly and de novo assembly of T. parva parent and progeny genomes
Strain | Assembly | Number of scaffolds | N50 scaffolds (nt) | Number of contigs (nt)1 | N50 contigs (nt)1 | Assembled bases (nt)1 |
|---|---|---|---|---|---|---|
Marikebuni | Reference | - | - | 399 | 90892 | 8067780 |
De novo | 31 | 1841172 | 339 | 175119 | 8457331 | |
Uganda | Reference | - | - | 416 | 104202 | 8072088 |
De novo | 26 | 2000289 | 268 | 153816 | 8326153 | |
MugugaMarikebuni | Reference | - | - | 447 | 88526 | 8074124 |
De novo | 50 | 1846792 | 396 | 56601 | 8195173 | |
MugugaUganda | Reference | - | - | 288 | 165046 | 8138418 |
De novo 2 | 30 | 1209478 | 232 | 235334 | 8333992 |