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Table 2 Comparison of reference assembly and de novo assembly of T. parva parent and progeny genomes

From: High-resolution genotyping and mapping of recombination and gene conversion in the protozoan Theileria parva using whole genome sequencing

Strain Assembly Number of scaffolds N50 scaffolds (nt) Number of contigs (nt)1 N50 contigs (nt)1 Assembled bases (nt)1
Marikebuni Reference - - 399 90892 8067780
  De novo 31 1841172 339 175119 8457331
Uganda Reference - - 416 104202 8072088
  De novo 26 2000289 268 153816 8326153
MugugaMarikebuni Reference - - 447 88526 8074124
  De novo 50 1846792 396 56601 8195173
MugugaUganda Reference - - 288 165046 8138418
  De novo 2 30 1209478 232 235334 8333992
  1. 1Only contigs with length above 100 nt were included.
  2. 2 Assembled with 454 gsAssembler version 2.5.3.