From: Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells
3 hours | 6 hours | 12 hours | 24 hours | 48 hours | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Down-regulated* | Up-regulated* | Down-regulated* | Up-regulated* | Down-regulated* | Up-regulated* | Down-regulated* | Up-regulated* | Down-regulated* | Up-regulated* | |
Total number of DE bins | 8,316 | 17,348 | 4,107 | 6,746 | 5,276 | 5,264 | 6,714 | 5,464 | 6,217 | 3,939 |
Exonic bins | 392 | 2,053 | 249 | 356 | 299 | 434 | 334 | 258 | 203 | 269 |
Bins that overlap both exons and introns | 648 | 2,597 | 409 | 699 | 492 | 704 | 566 | 617 | 429 | 386 |
Bins that overlap Ensembl exons | 127 | 297 | 79 | 92 | 79 | 110 | 101 | 104 | 72 | 58 |
Bins that overlap exons of Ensembl retained introns | 27 | 78 | 29 | 26 | 24 | 20 | 31 | 32 | 25 | 25 |
Bins that overlap both Ensembl exons and exons of Ensembl retained introns | 3 | 9 | 1 | 1 | 0 | 2 | 5 | 2 | 0 | 1 |
Intronic bins | 6,530 | 10,274 | 3,041 | 5,063 | 4,062 | 3,515 | 5,359 | 3,995 | 5,070 | 2,953 |
Bins that overlap EST (both exons and introns) | 75 | 223 | 41 | 65 | 57 | 71 | 50 | 53 | 65 | 46 |
Bins that overlap EST (exons only) | 25 | 115 | 23 | 34 | 29 | 46 | 19 | 33 | 21 | 16 |
Bins that overlap EST (introns only) | 248 | 527 | 73 | 123 | 86 | 96 | 95 | 99 | 91 | 56 |
Intergenic bins | 241 | 1,175 | 162 | 287 | 148 | 266 | 154 | 271 | 241 | 129 |
Total number of DE bins | 100.00 % | 100.00 % | 100.00 % | 100.00 % | 100.00 % | 100.00 % | 100.00 % | 100.00 % | 100.00 % | 100.00 % |
Exonic bins | 4.71 % | 11.83 % | 6.06 % | 5.28 % | 5.67 % | 8.24 % | 4.97 % | 4.72 % | 3.27 % | 6.83 % |
Bins that overlap both exons and introns | 7.79 % | 14.97 % | 9.96 % | 10.36 % | 9.33 % | 13.37 % | 8.43 % | 11.29 % | 6.90 % | 9.80 % |
Bins that overlap Ensembl exons | 1.53 % | 1.71 % | 1.92 % | 1.36 % | 1.50 % | 2.09 % | 1.50 % | 1.90 % | 1.16 % | 1.47 % |
Bins that overlap exons of Ensembl retained introns | 0.32 % | 0.45 % | 0.71 % | 0.39 % | 0.45 % | 0.38 % | 0.46 % | 0.59 % | 0.40 % | 0.63 % |
Bins that overlap both Ensembl exons and exons of Ensembl retained introns | 0.04 % | 0.05 % | 0.02 % | 0.01 % | 0.00 % | 0.04 % | 0.07 % | 0.04 % | 0.00 % | 0.03 % |
Intronic bins | 78.52 % | 59.22 % | 74.04 % | 75.05 % | 76.99 % | 66.77 % | 79.82 % | 73.11 % | 81.55 % | 74.97 % |
Bins that overlap EST (both exons and introns) | 0.90 % | 1.29 % | 1.00 % | 0.96 % | 1.08 % | 1.35 % | 0.74 % | 0.97 % | 1.05 % | 1.17 % |
Bins that overlap EST (exons only) | 0.30 % | 0.66 % | 0.56 % | 0.50 % | 0.55 % | 0.87 % | 0.28 % | 0.60 % | 0.34 % | 0.41 % |
Bins that overlap EST (introns only) | 2.98 % | 3.04 % | 1.78 % | 1.82 % | 1.63 % | 1.82 % | 1.41 % | 1.81 % | 1.46 % | 1.42 % |
Intergenic bins | 2.90 % | 6.77 % | 3.94 % | 4.25 % | 2.81 % | 5.05 % | 2.29 % | 4.96 % | 3.88 % | 3.27 % |