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Table 1 Summary of SOLiD ChIP-seq analysis

From: Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR

Uniquely Mapped Reads

Antibody

Total

Raw Reads

MAPQ > 1

% Mapping

MAPQ > 5

% Mapping

IgG

37,611,815

8,343,715

 

5.550,631

14.8

LRH-1

40,285,362

10,635,029

 

8,002,341

19.9

  1. The reads were generated from one quadrant of SOLiD ChIP-seq system. All reads were filtered for high quality reads, as well as for alignment and unique placement in the mouse reference genome by using the SOLiD BioScope Software. Antibody and total raw reads (black). Analyzed uniquely mapped reads used for analysis (Bold)