From: Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle
Genotypes used | Mean allelic error rate (%) of imputation | Milk volume | Fat yield | Protein yield | Survival | Daughter fertility |
---|---|---|---|---|---|---|
50K | - | 0.540 | 0.527 | 0.499 | 0.224 | 0.251 |
Subset Bovine3K | - | 0.444 | 0.464 | 0.429 | 0.187 | 0.200 |
Subset Bovine LD 7K | - | 0.481 | 0.516 | 0.443 | 0.186 | 0.232 |
50K-imputed (Test imputedAA using Bovine3K) | 3.86 | 0.533 | 0.523 | 0.496 | 0.200 | 0.244 |
50K-imputed (Test imputedA with BovineLD) | 2.30 | 0.546 | 0.531 | 0.507 | 0.214 | 0.246 |
50K-imputed (Train & Test imputedB using Bovine3K) | 5.52 | 0.505 | 0.515 | 0.481 | 0.207 | 0.245 |
50K-imputed (Train & Test imputedB using BovineLD) | 3.06 | 0.530 | 0.524 | 0.492 | 0.209 | 0.248 |
800K-imputedC | - | 0.558 | 0.530 | 0.526 | 0.232 | 0.256 |
800K-dosageC | - | 0.554 | 0.525 | 0.520 | 0.229 | 0.253 |