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Table 3 Percentage of EIs overlap with DMRs

From: Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions

Cell line

Overlaps with DMRs (%)

T-DMR

R-DMR

C-DMR

Whole genome C-DMR

   

Hyper

Hypo

Hyper

Hypo

Hyper

Hypo

%

En.

p

%

En.

p

%

En.

p

%

En.

p

%

En.

p

%

En.

p

%

En.

p

H1

53.4

2.8

<10-3

19.4

3.1

<10-3

5.8

3.1

0.02

11.7

3.8

<10-3

4.9

1.4

0.24

5.6

5.2

<10-3

0.9

1

0.31

ADA-38

39.1

2.1

<10-3

17.4

3.2

<10-3

2.2

1.2

0.33

6.5

2.2

0.05

6.5

2

0.08

4.1

4.1

<10-3

0.4

0.5

0.84

HA

60.4

2.9

<10-3

19.3

3.1

<10-3

11

5.5

<10-3

16.7

5.4

<10-3

4.5

1.3

0.25

8.6

7.3

<10-3

1

1.1

0.34

HPF

59.5

2.8

<10-3

17.5

2.8

<10-3

12.8

6.1

<10-3

17.5

5.1

<10-3

5.7

1.5

0.09

9.4

7.6

<10-3

1.3

1.4

0.04

HAEC

62.3

2.9

<10-3

14.3

2.2

<10-3

11.7

5.6

<10-3

15.7

4.5

<10-3

4.6

1.2

0.29

7

5.3

<10-3

1.1

1.1

0.27

  1. Notes: En. = Enrichment. Statistical significances were tested by 1000 permutations.
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BMC Genomics

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