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Table 1 Description of the 27 alfalfa genotypes used in this study, their approximate fall dormancy level, and overall sequence statistics

From: Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing

Entry

Group†

Source or Reference‡

Ploidy

Subspecies

Approximate fall dormancy level*

Total reads (millions)

Reads aligned (%)

Uniquely aligned reads (%)

B75GH-402

1

FGI

4

subsp. sativa

4

26.5

92.9

86.3

B85-912

1

FGI

4

subsp. sativa

4

23.9

92.8

86.0

B85-920

1

FGI

4

subsp. sativa

4

29.5

92.9

86.6

B86-220

1

FGI

4

subsp. sativa

4

29.9

93.4

87.2

CW A-9

1

C/W

4

subsp. sativa

9

28.2

93.2

87.1

CW B-7

1

C/W

4

subsp. sativa

7

31.6

93.3

87.0

CW D-10

1

C/W

4

subsp. sativa

10

27.5

92.9

86.6

CW I-4

1

C/W

4

subsp. sativa

4

24.8

92.7

85.9

CV020017

1

Pioneer

4

subsp. sativa

4

28.1

92.8

86.4

DW000577

1

Pioneer

4

subsp. sativa

4

24.5

92.9

86.3

LH050543

1

Pioneer

4

subsp. sativa

3

24.9

92.8

86.4

NL002724

1

Pioneer

4

subsp. sativa

4

23.1

93.8

88.5

DL317

1

DL

4

subsp. sativa

8

28.1

92.9

86.2

DL833

1

DL

4

subsp. sativa

4

30.1

93.3

87.0

DL879W4

1

DL

4

subsp. sativa

4

27.4

93.4

86.9

DL263

1

DL

4

subsp. sativa

4

24.7

93.3

87.0

95-608

2

[21]

4

subsp. sativa

9

28.1

92.8

86.0

Altet-4

2

[21]

4

subsp. sativa

5

26.8

93.0

86.1

NECS-141

2

[21]

4

subsp. sativa

4

25.8

92.3

85.6

ABI408

2

[10–12]

4

subsp. sativa

3

27.3

93.2

86.8

Gabès

2

INRA,[22]

4

subsp. sativa

10

17.2

92.7

86.8

Magali-A

2

INRA,[22]

4

subsp. sativa

6

18.8

92.3

85.2

PI243225-A

3

NPGS

2

subsp. caerulea

unknown

26.2

94.0

88.4

PI577551-B

3

NPGS

2

subsp. caerulea

unknown

19.5

92.7

86.0

PI631816-A

3

NPGS

2

subsp. falcata

unknown

25.1

92.6

86.6

PI251830-K

3

NPGS

2

subsp. falcata

unknown

29.6

92.3

85.8

WISFAL-6

3

[10–12]

4

subsp. falcata

2

26.8

93.1

86.7

  1. †1 = elite cultivated genotypes from commercial USA breeding programs; 2 = non-elite cultivated genotypes; 3 = non-cultivated, wild germplasm.
  2. ‡FGI =Forage Genetics International; C/W = Cal/West Seeds; Pioneer = Pioneer Hi-bred, Inc.; DL = Dairyland, Inc.; INRA = French National Institute for Agricultural Research; NPGS = National Plant Germplasm System, United States Department of Agriculture.
  3. *Fall dormancy based on the scale of 1 = very fall dormant to 11 = very non-dormant[23].
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BMC Genomics

ISSN: 1471-2164

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