Skip to main content

Table 3 SB and GATK-SB difference

From: The effect of strand bias in Illumina short-read sequencing data

Chr Pos a1 b2 c3 d4 SB GATK-SB Fisher Genotype GATK Genotype GWAS
7 43917013 11 2 20 0 2.54 0.16 0.85 AG AA
14 95923670 16 2 10 0 1.56 0.12 0.48 CT TT
19 57088850 8 2 16 0 2.6 0.21 0.86 AC AA
  1. 1. Forward strand reference allele.
  2. 2. Forward strand non reference allele.
  3. 3. Reverse strand reference allele.
  4. 4. Reverse strand non reference allele.