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Table 3 SB and GATK-SB difference

From: The effect of strand bias in Illumina short-read sequencing data

Chr

Pos

a1

b2

c3

d4

SB

GATK-SB

Fisher

Genotype GATK

Genotype GWAS

7

43917013

11

2

20

0

2.54

0.16

0.85

AG

AA

14

95923670

16

2

10

0

1.56

0.12

0.48

CT

TT

19

57088850

8

2

16

0

2.6

0.21

0.86

AC

AA

  1. 1. Forward strand reference allele.
  2. 2. Forward strand non reference allele.
  3. 3. Reverse strand reference allele.
  4. 4. Reverse strand non reference allele.
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BMC Genomics

ISSN: 1471-2164

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