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Table 6 Summarized number of SNPs

From: A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings

Origin of reads at SNP position Number of SNPs
ci/ci 15,843
ci/c 7,158
ci/i 2,547
c/i 886
c/c 817
i/i 437
  1. Number of SNPs with a specific composition of reads. ci/ci: variant and reference nucleotide appeared in reads from coastal and interior libraries; ci/c, ci/i: variant or reference nucleotide appeared only in reads of the coastal or interior libraries, the other one appeared in reads of both kind of libraries; c/i: variant or reference nucleotide appeared only in reads of the coastal libraries, the other one only in reads of the interior libraries; c/c, i/i: variant and reference nucleotides appeared only in reads of coastal or interior libraries.