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Table 1 Expression analysis of Papaya Micro RNAs

From: Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya

 

MiR ID

qPCR fold change

Deep sequencing reads per million

Flower

Leaves

PRSV infected leaves

Flower

Leaves

PRSV infected leaves

1

cpa-MIR156/57a

1.00

1.46

2.70

132.68

2426.48

1093.61

2

cpa-MIR156/57b

1.00

0.09

0.03

132.47

815.04

540.48

3

cpa-MIR159a

1.00

0.80

0.05

441.84

805.61

0.00

4

cpa-MIR159b

1.00

0.06

0.03

0.00

0.00

0.67

5

cpa-MIR159/319

   

1.07

0.00

0.00

6

cpa-MIR160

1.00

0.18

0.46

19.32

16.08

11.32

cpa-MIR160*

1.00

0.32

27.34

0.00

0.00

191.11

7

cpa-MIR164

1.00

0.10

0.25

229.94

114.05

77.69

8

cpa-MIR165/166a††

1.00

1.20

0.70

16800.30

29790.48

21150.36

9

cpa-MIR165/166b††

   

4096.54

8447.99

6703.93

11

cpa-MIR165/166c††

   

0.00

161.8

0.00

10

cpa-MIR166b*

1.00

0.47

29.51

0.00

0.00

456.35

 

cpa-MIR166c*

   

0.00

83.60

0.00

12

cpa-MIR167a†††

1.00

1.17

2.30

171.54

155.63

35.74

13

cpa-MIR167b†††

   

60.11

650.83

176.68

14

cpa-MIR167c†††

   

17.60

4725.63

1581.26

 

cpa-MIR167*

1.00

1.13

0.46

0.00

168.50

0.00

15

cpa-MIR169

1.00

0.19

0.26

0.00

0.00

0.44

16

cpa-MIR170/71

1.00

0.41

0.69

22.97

94.32

35.96

17

cpa-MIR172

1.00

0.07

0.13

5.58

0.00

0.00

18

cpa-MIR390

1.00

0.48

1.14

428.53

0.00

0.00

cpa-MIR390*

1.00

0.12

0.31

0.00

0.00

8.88

19

cpa-MIR393

1.00

0.57

0.43

1.50

0.00

0.00

cpa-MIR393*

1.00

0.42

6.79

0.00

0.00

11.10

20

cpa-MIR394

1.00

0.70

0.57

167.67

202.80

116.31

21

cpa-MIR395

1.00

1.36

0.54

0.00

1.50

7.10

22

cpa-MIR396

1.00

2.63

0.15

0.00

55.74

0.00

cpa-MIR396*

1.00

0.72

5.25

79.01

0.00

1021.03

23

cpa-MIR408

1.00

0.11

0.15

9.23

0.00

0.00

 

cpa-MIR408*

1.00

0.16

12.41

0.00

4.07

45.72

24

cpa-MIR535

1.00

0.51

0.23

292.63

686.85

348.48

25

cpa-MIR-novel_01

1.00

0.60

0.71

13.31

30.87

9.10

26

cpa-MIR-novel_02

1.00

0.15

1.43

225.86

69.46

3595.35

27

cpa-MIR-novel_03

1.00

0.22

30.76

8.37

8.15

19.31

28

cpa-MIR-novel_04

1.00

0.19

0.36

3.01

6.43

3.33

29

cpa-MIR-novel_05

1.00

0.20

0.82

110.14

134.84

21.75

30

cpa-MIR-novel_06

1.00

0.11

0.52

54.10

40.52

0.00

cpa-MIR-novel_06*

1.00

0.19

284.64

0.00

0.00

108.10

31

cpa-MIR-novel_07

1.00

0.15

4.12

3.44

0.00

1.55

32

cpa-MIR-novel_08

1.00

0.22

0.16

0.00

1.29

0.00

33

cpa-MIR-novel_09a

1.00

0.30

0.29

0.00

0.64

0.00

34

cpa-MIR-novel_09b

1.00

0.45

0.44

0.00

13.51

29.30

35

cpa-MIR-novel_10

1.00

2.15

1.67

71.71

0.00

0.00

36

cpa-MIR-novel_11

1.00

0.73

0.44

57.75

0.00

0.00

37

cpa-MIR-novel_12

1.00

0.02

0.14

37.36

0.00

0.00

38

cpa-MIR-novel_13

1.00

0.53

0.63

6.44

0.00

0.00

39

cpa-MIR-novel_14

1.00

0.28

0.00

5.37

0.00

0.00

40

cpa-MIR-novel_15

1.00

0.29

0.28

4.29

0.00

0.00

41

cpa-MIR-novel_16

1.00

0.28

0.56

3.01

0.00

0.00

42

cpa-MIR-novel_17

1.00

0.00

0.51

2.58

0.00

0.00

43

cpa-MIR-novel_18

1.00

0.87

2.52

2.58

0.00

0.00

44

cpa-MIR-novel_19

1.00

0.24

0.65

2.58

0.00

0.00

45

cpa-MIR-novel_20

Not detected by qPCR

4.07

0.00

0.00

46

cpa-MIR-novel_21

1.00

0.29

0.24

2.36

0.00

0.00

47

cpa-MIR-novel_22

1.00

1.69

0.29

2.15

0.00

0.00

48

cpa-MIR-novel_23

1.00

0.28

0.19

2.15

0.00

0.00

49

cpa-MIR-novel_24

1.00

0.13

0.00

0.00

12.22

0.00

50

cpa-MIR-novel_25

1.00

0.14

0.00

0.00

9.00

0.00

51

cpa-MIR-novel_26

1.00

0.37

0.48

0.00

5.57

0.00

52

cpa-MIR-novel_27

1.00

1.00

0.10

0.00

4.07

0.00

53

cpa-MIR-novel_28

Not detected by qPCR

0.00

2.36

0.00

54

cpa-MIR-novel_29

1.00

0.04

0.11

0.00

3.22

0.00

55

cpa-MIR-novel_30

1.00

0.42

0.22

0.00

3.00

0.00

56

cpa-MIR-novel_31

1.00

0.21

0.88

0.00

2.79

0.00

57

cpa-MIR-novel_32

1.00

0.17

0.40

0.00

2.14

0.00

58

cpa-MIR-novel_33

1.00

6.94

5.25

0.00

0.00

6.66

59

cpa-MIR-novel_34

1.00

0.00

2.06

0.00

0.00

6.66

60

cpa-MIR-novel_35

0.00

1.00

3.60¥

0.00

0.00

2.44

  1. qPCR fold change is normalized on initial RNA input, the sequencing expression level was normalized on per million reads of respective library.
  2. †,††,††† - The sequences can not be distinguished by stem-loop primers, so tested together for qPCR.
  3. ¥ - normalized on leaf expression level since no expression detected on flower.