Table 5 The list of common transcriptional response from all compared conditions
From: The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger
DSM code | DSM annotation | Fold-change B36/N402 | P | FDR |
|---|---|---|---|---|
Protein folding | Â | Â | Â | Â |
An01g13220 | similar to the chaperone Lhs1 | 2.26 | 1.34E-09 | 1.58E-07 |
An02g14800 | Protein disulfide isomerase PdiA | 1.72 | 5.98E-08 | 3.43E-06 |
An01g04600 | Protein disulfide isomerase PrpA | 2.08 | 2.21E-09 | 2.40E-07 |
An01g08420 | calnexin ClxA | 2.42 | 8.96E-10 | 1.13E-07 |
An11g04180 | chaperone BipA | 2.32 | 8.63E-10 | 1.11E-07 |
An16g07620 | similar to ER oxidising protein Ero1 | 1.97 | 1.02E-08 | 8.15E-07 |
An18g02020 | Protein disulfide isomerase TigA | 1.89 | 1.61E-08 | 1.17E-06 |
An11g11250 | similar to the chaperone P58IPK Homo sapiens | 1.80 | 2.58E-07 | 1.03E-05 |
Translocation/Signal peptidase complex | Â | Â | Â | |
An01g13070 | similar to ER protein-translocation complex subunit SEC63 | 2.02 | 2.17E-08 | 1.47E-06 |
An16g08830 | similar to component of subcomplex SEC71 | 1.80 | 3.47E-08 | 2.17E-06 |
An01g11630 | similar to translocation complex component SSS1 | 1.71 | 1.88E-07 | 8.11E-06 |
An09g05420 | similar to signal peptidase subunit SPC3 | 1.99 | 6.90E-09 | 6.03E-07 |
An01g00560 | similar to signal peptidase subunit SEC11 | 1.84 | 5.70E-07 | 1.84E-05 |
An15g06470 | similar to signal sequence receptor α-subunit | 1.86 | 4.49E-08 | 2.72E-06 |
Glycosylation | Â | Â | Â | |
An14g05910 | similar to mannosyltransferase ALG2 | 1.93 | 2.28E-08 | 1.53E-06 |
An03g04410 | similar to glucosyltransferase ALG5 | 1.78 | 3.47E-07 | 1.26E-05 |
An02g03240 | similar to N-acetylglucosaminephosphotransferase ALG7 | 1.92 | 1.76E-08 | 1.24E-06 |
An07g04190 | similar to glycosyltransferase WBP1 | 1.69 | 1.03E-07 | 5.04E-06 |
An02g14560 | oligosaccharyltransferase alpha subunit OSTA | 2.05 | 2.27E-09 | 2.40E-07 |
An18g03920 | similar to oligosaccharyltransferase subunit OST2 | 2.04 | 2.49E-09 | 2.56E-07 |
An18g04260 | similar to UDP-galactose transporter HUT1 | 2.46 | 1.06E-09 | 1.28E-07 |
An13g00620 | similar to beta subunit of an ER alpha-glucosidase | 1.53 | 1.24E-06 | 3.47E-05 |
An15g01420 | similar to glucosidase I CWH41 | 1.81 | 2.90E-08 | 1.84E-06 |
An02g14940 | similar to flippase RFT1 | 1.49 | 2.62E-06 | 6.38E-05 |
Vesicle trafficking/transport | Â | Â | Â | |
An03g04940 | similar to COPII vesicle coat component protein ERV41 | 2.12 | 1.20E-08 | 9.44E-07 |
An01g04320 | similar to COPII vesicle coat component protein ERV46 | 2.12 | 7.61E-09 | 6.57E-07 |
An02g04250 | similar to ER protein P58 (lectin family) Rattus norvegicus | 1.77 | 2.01E-08 | 1.39E-06 |
An08g06780 | similar to ER to Golgi transport protein USO1 | 1.52 | 2.93E-06 | 7.00E-05 |
Lipid metabolism | ||||
An02g13410 | similar to acetyl-coenzyme A transporter AT-1 | 2.10 | 4.55E-09 | 4.23E-07 |
Stress related | Â | Â | ||
An12g03580 | similar to glutathione S-transferase 3 MGST3 H. sapiens | 1.51 | 1.21E-05 | 2.23E-04 |
An01g14100 | weakly similar to stress protein HERP Mus musculus | 1.61 | 1.12E-06 | 3.21E-05 |
Cell cycle and DNA processing | Â | Â | Â | |
An01g08170 | similar to DNA repair endonuclease RAD1 S. pombe | 2.05 | 1.62E-08 | 1.17E-06 |
Phosphate metabolism | Â | Â | Â | |
An12g01910 | similar to phytase PHYA3 Aspergillus fumigatus | 0.56 | 2.09E-07 | 8.76E-06 |
Cell rescue. Defense and virulence | Â | Â | Â | |
An18g00980 | similar to membrane protein PTH11 M. grisea | 0.41 | 1.32E-08 | 1.01E-06 |
Unclassified | Â | Â | ||
An08g03960 | hypothetical endoplasmic reticulum associated protein | 1.55 | 7.36E-06 | 1.47E-04 |
An08g03970 | hypothetical protein | 1.87 | 2.87E-08 | 1.83E-06 |
An07g10280 | hypothetical protein | 1.43 | 6.40E-06 | 1.31E-04 |
An09g06130 | hypothetical protein | 1.64 | 4.24E-07 | 1.46E-05 |
An18g01000 | hypothetical protein | 0.56 | 1.05E-06 | 3.03E-05 |
An13g01520 | hypothetical protein | 0.49 | 3.57E-06 | 8.23E-05 |