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Table 1 Number of called SNPs grouped by both genomic location class and positive relative to baits

From: Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture

  Category Candidate SNPS Called SNPs Percent of total
Categorized by annotation of genomic region     
  Promoter 152223 64534 12.8
  5-UTR 30586 13433 2.7
  Exon 446450 240693 47.9
  3-UTR 29481 11753 2.3
  Intron 329559 149919 29.8
  Intergenic1 154785 22329 4.4
Categorized by position relative to baits     
  Within-bait 360558 241351 48.7
  Adjacent to baits 568115 225581 45.5
  Off-target 201201 28594 5.8
  1. 1Inclues SNPs from both targeted intergenic control regions as well as off-target regions.