Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing

Table 2 Numbers of putative SNPs

	Bear River	Bonneville	Coastal	Colorado River	Greenback	Lahontan Basin	Rio Grande	Westslope	Yellowstone
Bear River	–	2279	482	2170	2430	5459	1807	3600	941
Bonneville	280	–	393	1182	1368	3528	1118	2268	1476
Coastal	50	63	–	314	479	407	242	228	302
Colorado River	270	148	35	–	1127	2775	969	1679	1225
Greenback	294	131	94	99	–	3604	1125	2578	1603
Lahontan Basin	854	428	74	358	499	–	2258	2722	3277
Rio Grande	273	91	24	64	63	235	–	1401	1141
Westslope	539	243	50	274	227	301	152	–	1930
Yellowstone	110	129	56	110	197	419	130	200	–

Pairwise comparisons of putative SNP loci among cutthroat trout subspecies discovered by 454 pyro-sequencing, Comparisons are shown for 6X coverage (above diagonal), and for 10X coverage (below diagonal).

ISSN: 1471-2164