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Table 2 The number of SNPs from 96-plex validation detected using BWA/Samtools approach

From: Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome data

Individual No. of successful assays Number of SNPs also detected by BWA Number of SNPs not detected by BWA Sensitivity False negative
   True SNPs Total True SNPs Total   
AA3 25 5 (45.5%) 11 2 14 71.4% 28.6%
AA6 28 14 (77.8%) 18 5 10 66.7% 33.3%
AM20 28 12 (70.6%) 17 3 11 80.0% 20.0%
AM22 26 5 (33.0%) 15 3 11 62.5% 37.5%