Table 2 miRNAs having substitutions at the GGU motif
From: Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
miRNAs | Canonical sequence* | Modified reads | Percentage |
|---|---|---|---|
tgu-let-7a | UGA GGU AG UAGGUUGUAUAGUU | 11500 | 5.5% |
tgu-let-7b | UGA GGU AG UAGGUUGUGUGGUU | 1629 | 6.7% |
tgu-let-7c | UGA GGU AG UAGGUUGUAUGGUU | 1556 | 5.2% |
tgu-let-7d | AGA GGU AG UAGGUUGCAUAGUU | 395 | 5.5% |
tgu-let-7e | UGA GGU AG UAGAUUGAAUAGUU | 3864 | 5.2% |
tgu-let-7f | UGA GGU AG UAGAUUGUAUAGUU | 12490 | 5.1% |
tgu-let-7i | UGA GGU AG UAGUUUGUGCUGUU | 3792 | 8.2% |
tgu-miR-122 | UGGAGUGU GACAAUGGU GUUUG | 6211 | 14.0% |
tgu-miR-133b | UU GGU CCC CUUCAACCAGCUAU | 18 | 5.1% |
tgu-miR-140 | ACCACAG G GU AGAACCACGGAC | 674 | 5.0% |
tgu-miR-15a | UAGCAGCA CAUAAUGGU UUGU | 382 | 5.4% |
tgu-miR-15c | UAGCAGCA CAUCAUGGU UUGU | 187 | 5.4% |
tgu-miR-181b | AACAUUCA UUGCUGUCGGU GGGU | 254 | 6.2% |
tgu-miR-183 | UAUGGCAC UGGU AGAAUUCACU | 5 | 5.1% |
tgu-miR-18a | UAA GGU GC AUCUAGUGCAGAUA | 228 | 12.5% |
tgu-miR-18b | UAA GGU GC AUCUAGUGCAGUU | 7 | 5.0% |
tgu-miR-196 | UA GGU AGU UUCAUGUUGUUGGG | 8 | 10.0% |
tgu-miR-221 | AGCUACAU UGUCUGCUGGGU UUC | 2636 | 6.4% |
tgu-miR-222 | AGCUACAU CUGGCUACUGGGU CUC | 1413 | 6.5% |
tgu-miR-2970 | GACAGUCA GCAGUUGGU CUGG | 219 | 11.7% |
tgu-miR-363 | AAUUGCAC GGU AUCCAUCUGU | 83 | 6.8% |
tgu-miR-383 | CAGAUCAG AAGGU GAUUGUGGC | 101 | 7.3% |
tgu-miR-456 | CAGGCUGG UUAGAUGGU UGUC | 34 | 7.8% |
tgu-miR-458 | AUAGCUCU UGGAAUGGU UCUGC | 31 | 5.1% |
tgu-miR-551 | GCGACCCA UACUUGGU UUCAG | 69 | 5.0% |