From: GemSIM: general, error-model based simulator of next-generation sequencing data
 | Ill. v4 1st read | Ill. v4 2nd read | Ill. v5 1st read | Ill. v5 2nd read | Roche/454 |
---|---|---|---|---|---|
Overall (%) | 0.99 | 2.40 | 0.28 | 0.34 | 0.12 |
A (%) | 1.23 | 2.86 | 0.25 | 0.33 | 0.14 |
T (%) | 0.91 | 2.19 | 0.34 | 0.39 | 0.10 |
G (%) | 0.78 | 2.00 | 0.23 | 0.23 | 0.12 |
C (%) | 1.12 | 2.78 | 0.29 | 0.41 | 0.12 |
1st most freq. (%) | GGGT A - > GGGG A (4.47) | ACAA G - > ACAC G (3.94) | GGGT C - > GGGG C (5.85) | AGGT G- > AGGG G (3.69) | AAAC A - > AAAA A (1.07) |
2nd most freq. (%) | AGGT G - > AGGG G (3.71) | AGGT G - > AGGG G (3.29) | CTCG G - > CTCC G (5.83) | CGGT G - > CGGG G (2.7) | CCCA C - > CCCC C (1.02) |
3rd most freq. (%) | CCCA A - > CCCC A (3.15) | CCCA A - > CCCC A (3.24) | GGGC G - > GGGG G (4.06) | GGGT G - > GGGG G (2.45) | CCCC G - > CCCA G (0.75) |
4th most freq. (%) | CGGT G - > CGGG G (3.06) | GGGT A - > GGGG A (3.14) | CGGT G - > CGGG G (3.65) | GGGT C - > GGGG G (2.03) | AAAG G - > AAAA G (0.70) |
5th most freq. (%) | GGGT G - > GGGG G (2.71) | ACAA A - > ACAC A (2.97) | GGGT A - > GGGG A (3.20) | CGGT C - > CGGG C (1.98) | AGGA A - > AGGG A (0.52) |
Insertions (%) | 0.000723 | 0.000935 | 0.000622 | 0.001300 | 0.290000 |
Deletions (%) | 0.000434 | 0.000482 | 0.000353 | 0.000484 | 0.270000 |