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Table 2 Gene ontology terms enriched for the 18 gene set validated for analysis using AraNet

From: A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses

Locus_ID

Gene Symbol

GO Plant terms

GO Cellular terms

GO Function terms

AT4G26000

na

shoot development; gynoecium development;

Na

nucleic acid binding;

AT3G07800

na

Na

Na

thymidine kinase activity;

AT1G56580

na

Na

Na

Na

AT5G23850

na

Na

Na

Na

AT5G14450

na

lipid metabolic process;

cellulose and pectin-containing cell wall;

carboxylic ester hydrolase activity;

AT5G19300

na

Na

Na

na

AT2G45640

na

response to salt stress; response to abscisic acid stimulus;

mitochondrion;

protein binding; transcription regulator activity;

AT1G80480

na

Na

plastid chromosome;

na

AT5G59310

LTP4

lipid transport; response to abscisic acid stimulus;

endomembrane system;

lipid binding;

AT5G63090

LOB

organ boundary specification between lateral organs and the meristem;

chloroplast;

na

AT1G69830

na

starch catabolic process;

chloroplast;

alpha-amylase activity;

AT3G28910

MYB30

response to bacterium; hypersensitive response; response to salt stress; response to ethylene stimulus; response to auxin stimulus; response to abscisic acid stimulus; response to gibberellin stimulus; response to salicylic acid stimulus; response to jasmonic acid stimulus; response to cadmium ion;

nucleus;

DNA binding; transcription factor activity;

AT5G63660

na

defense response;

endomembrane system;

na

AT4G25720

na

Na

mitochondrion;

catalytic activity;

AT1G16070

na

regulation of transcription;

Na

transcription factor activity;

AT2G26680

na

Na

endomembrane system;

na

AT1G13260

RAV1

regulation of transcription, DNA-dependent; response to brassinosteroid stimulus; negative regulation of flower development; leaf development; lateral root development;

nucleus;

DNA binding; transcription factor activity;

AT3G58690

na

protein amino acid phosphorylation;

endomembrane system;

kinase activity;

  1. Na = not available.
  2. Underlined gene loci are connected in the extended regulatory network illustrated in Figure 6. See also the GO analysis data in Additional file 6