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Table 4 Table to show the list of loci up-regulated by GA application, together with predicted annotations based on BLASTX hits in public databases

From: A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses

Locus ID Transcript Length (bp) BLASTX best hits DB Accessions p-value Annotation
12027 1800 ABV08820.1 0 acetoacetyl-coenzyme A thiolase [Salviamiltiorrhiza]
   ABC74567.1 0 acetoacetyl-CoA thiolase [Picrorhiza kurrooa]
   NP_568694.2 0 acetyl-CoA acetyltransferase, cytosolic 1 [Arabidopsis thaliana]
   AAU95618.1 0 cytosolic acetoacetyl-coenzyme A thiolase [Nicotiana tabacum]
30091 1389 AAW83819.1 6 × 10-49 GASA2-like protein [Pelargonium zonale]
   CBI30071.3 6 × 10-48 unnamed protein product [Vitis vinifera]
   XP_002276458.1 8 × 10-48 PREDICTED: hypothetical protein [Vitis vinifera]
   ABQ42002.1 5 × 10-46 gibberellin induced protein [Sonneratia caseolaris]
   ABD33300.1 9 × 10-45 Gibberellin regulated protein [Medicago truncatula]
   AEC10958.1 1 × 10-43 gibberellin induced protein [Camellia sinensis]
43376 829 AAD10836.1 3 × 10-50 P-glycoprotein [Solanum tuberosum]
   XP_002323485.1 6 × 10-48 multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]
   ABB97035.1 4 × 10-47 ABC transporter-like protein [Brassica rapa]
54049 574 ACU23396.1 2 × 10-56 unknown [Glycine max]
   XP_002532163.1 1 × 10-48 DNA-damage-inducible protein f, putative [Ricinus communis]
   NP_001164052.1 2 × 10-44 MATE family protein [Zea mays]
   XP_002891631.1 1 × 10-43 mate efflux family protein [Arabidopsis lyrata subsp. lyrata]
   ADK70243.1 2 × 10-43 aluminum activated citrate transporter 1-5 [Secale cereale]
   BAD87624.1 7 × 10-39 MATE efflux family protein-like [Oryza sativa Japonica Group]
73039 873 NP_001151695.1 2 × 10-49 gamma-interferon-inducible lysosomal thiol reductase [Zea mays]
   NP_563779.1 3 × 10-48 GILT domain-containing protein [Arabidopsis thaliana]
6420 936 NP_974828.1 6 × 10-08 arabinogalactan protein 41 [Arabidopsis thaliana]
39283 597 XP_002532467.1 5 × 10-10 Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
   XP_002888501.1 4 × 10-06 kinase family protein [Arabidopsis lyrata subsp. lyrata]
10708 1591 XP_002274655.1 2 × 10-156 PREDICTED: hypothetical protein [Vitis vinifera]
27762 238    Unknown Beta vulgaris subsp. vulgaris
29113 532    Unknown Beta vulgaris subsp. vulgaris
32928 100    Unknown Beta vulgaris subsp. vulgaris
54739 168    Unknown Beta vulgaris subsp. vulgaris
79469 143    Unknown Beta vulgaris subsp. vulgaris
88173 286    Unknown Beta vulgaris subsp. vulgaris
94815 102    Unknown Beta vulgaris subsp. vulgaris
127929 100    Unknown Beta vulgaris subsp. vulgaris
136937 100    Unknown Beta vulgaris subsp. vulgaris
151222 100    Unknown Beta vulgaris subsp. vulgaris
174489 100    Unknown Beta vulgaris subsp. vulgaris