Table 3 Experimental results of the estimated task allocation ratio for different sequence groups
From: CPU-GPU hybrid accelerating the Zuker algorithm for RNA secondary structure prediction applications
A (L = 68) | B (L = 120) | C (L = 154) | D (L = 221) | |
|---|---|---|---|---|
Avg. CPU exe. time | 1.081 | 4.737 | 8.424 | 19.059 |
Avg. GPU exe. time | 0.068 | 0.293 | 0.754 | 3.270 |
Speedup GPU vs. CPU | 15.90 | 16.17 | 11.17 | 5.83 |
Estimated allocation ratio | 5.92% | 5.83% | 8.22% | 14.64% |