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Table 1 Runtimes

From: Haplotype and minimum-chimerism consensus determination using short sequence data

Coverage

# SNPs

# Reads

Runtime

5X

1482

120

15 secs

10X

1970

240

61 secs

15X

2186

360

155 secs

20X

2280

480

430 secs

  1. Runtimes, simulating sequencing of the low diversity dataset with high error rate and "Simple" SNP caller (so that each read is considered as a unique haplotype).
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BMC Genomics

ISSN: 1471-2164

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