The pipeline of imiRTP. Here we present the first integrated miRNA Target Prediction toolkit (imiRTP) to search MTIs for Arabidopsis. In this toolkit, four online plant miRNA target prediction tools are considered. We then employ four local filters to select high quality candidates. Finally, it could output predicted results in several different formats. As for data, we collect 142 experimentally validated Arabidopsis MTIs and also 25,688 Degradome-seq support Arabidopsis MTIs.