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Table 2 Overview of the co-occurrences in TLR-stimulated DC gene expression patterns.

From: A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription

Cluster index Promoter set PWM A PWM B TF(s) associated with PWM A TF(s) associated with PWM B
1 nonCpG M00054 M00054 NF-kappaB NF-kappaB
1 all M00054 M00054 NF-kappaB NF-kappaB
9 all M00054 M00054 NF-kappaB NF-kappaB
12 all M00063 M01171 IRF family Bcl6
12 all M00063 M00963 IRF family T3R
12 nonCpG M00063 M00963 IRF family T3R
12 nonCpG M00063 M01171 IRF family Bcl6
13 all M00063 M00063 IRF family IRF
13 all M00063 PB0060 IRF family Hand1::Tcfe2a, Hand1:E47, SMAD, Smad3
13 all M00063 M00701 IRF family Smad3
14 all M00054 M00249 NF-kappaB CHOP:C/EBPalpha
14 all M00054 M00257 NF-kappaB RREB-1
14 all M00054 M00769 NF-kappaB AML, Osf2, PEBP, Runx1
18 all M00063 MA0099 IRF family Fos