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Table 1 Number of remaining input sequences from each step of miRNA identification on the four datasets

From: C-mii: a tool for plant miRNA and target identification

  TAIR10 (cDNAs) TAIR10 (miRNAs) miRBase 16 (Arabidopsis only) Rfam 10 (all plant RNAs except miRNAs)
miRNA identification steps 33,602 176 213 16,219
1. Sequence loading 30,707 176 213 15,822
2. Homolog search 1286 175 213 31
3. Primary miRNA folding 567 173 209 0
4. Precursor miRNA folding 223 164 195 0