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Table 1 Variation for predicted miRNA-gene target pairs

From: MicroRNA-centric measurement improves functional enrichment analysis of co-expressed and differentially expressed microRNA clusters

Index No. of algorithms showing positive voting Numbers of
   miRNAs Target links Genes
miRecords (Xiao et al., 2009)
#1 3 algorithms 553 1,234,390 17,602
#2 4 535 272,505 15,278
#3 5 407 53,041 9,747
#4 6 159 9,691 2,783
#5 7 29 68 66
#6 3 ~ 11 553 1,569,741 17,636
#7 4 ~ 11 535 335,351 15,422
#8 5 ~ 11 408 62,846 9,851
#9 6 ~ 11 159 9,805 2,816
#10 7 ~ 11 40 114 104
#11 3 ~ 11 including DIANA-microT 0 0 0
#12 3 ~ 11 including Microinspector 56 184 160
#13 3 ~ 11 including miRanda 552 1,416,379 17,584
#14 3 ~ 11 including mirtarget2 530 184,544 13,841
#15 3 ~ 11 including miTarget 0 0 0
#16 3 ~ 11 including NBmiRTar 42 201 172
#17 3 ~ 11 including PicTar 163 64,658 6,515
#18 3 ~ 11 including pita 551 1,559,586 16,676
#19 3 ~ 11 including rna22 54 232 197
#20 3 ~ 11 including rnahybrid 552 1,548,423 17,630
#21 3 ~ 11 including TargetScan 412 343,190 16,127
miRGen [23]
#22 DIANA-microT 175 1,816 1,206
#23 miRanda (microrna.org) 469 430,878 16,699
#24 miRanda (miRBase) 156 38,821 5,444
#25 PicTar (4-way) 177 68,100 6,391
#26 PicTar (5-way) 128 22,028 2,433
#27 TargetScanS 237 75,044 7,546