Skip to main content

Table 6 Coverage for the union (+) of two methods.

From: Combining multiple ChIP-seq peak detection systems using combinatorial fusion

x + y Coverage Number
of regions
  Score combination Rank combination  
A + E = PeakSeq + MACS 18964 18964 19895
A + D = PeakSeq + TRLocator 19433 19433 19281
C + E = CisGenome + MACS 19458 19458 20768
E + F = MACS + SISSRs 19459 19459 20767
A + B = PeakSeq + QuEST 19520 19520 22191
D + F = TRLocator + SISSRs 19742 19742 19673
B + E = QuEST + MACS 19760 19760 21242
C + D = CisGenome + TRLocator 19767 19767 19720
B + D = QuEST + TRLocator 20014 20014 20117
D + E = TRLocator + MACS 20127 20127 20279
B + F = QuEST + SISSRs 21003 21003 25574
A + F = PeakSeq + SISSRs 21032 21032 22876
B + C = QuEST + CisGenome 21165 21165 26457
C + F = CisGenome + SISSRs 21360 21360 26371
A + C = PeakSeq + CisGenome 21738 21738 24415