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Table 4 Improvement in GWAS-based association FDR as multi-species gene ranking score increases.

From: Multi-species data integration and gene ranking enrich significant results in an alcoholism genome-wide association study

FDR
q-value
Total SNPs passing QC Scored Score ≥1 Score ≥1.5 Score ≥2 Score = 2.5
All SNPs 547920 91774 18988 7948 2293 210
< 0.9 48016 6399 1863 399 866 178
< 0.8 643 469 415 163 199 108
< 0.7 6 8 164 5 117 72
< 0.6 0 5 0 0 42 53
< 0.5 0 5 0 0 39 0
< 0.4 0 5 0 0 27 0
< 0.3 0 0 0 0 0 0
< 0.2 0 0 0 0 0 0
< 0.1 0 0 0 0 0 0
< 0.05 0 0 0 0 0 0
Min q 0.605 0.369 0.667 0.636 0.357 0.526