RNA-Seq analysis implicates dysregulation of the immune system in schizophrenia

BMC Genomics

Table 1 Statistics of the number of fragments sequenced, aligned and mapped using TopHat

Sample	Sequenced fragments^a	All mapped fragments (%)	Uniquely mapped fragments (%)^b	Singleton fragments (%)^c	Spliced fragments (%)^d	Multi-loci mapped fragments (%)
Control
1295-ZZ-4	10,114,082	84.5	45.2	24.9	3.8	26.1
1295-ZZ-9	6,152,569	82.0	46.1	24.5	3.3	26.2
1295-ZZ-13	9,263,358	86.5	50.6	25.0	3.2	21.2
Case
1295-ZZ-21	9,287,780	85.8	50.7	25.1	3.3	20.9
1295-ZZ-32	8,911,007	85.4	48.5	26.3	4.0	21.2
1295-ZZ-36	8,211,577	86.6	50.7	23.3	3.2	22.8

^aEach fragment has two short sequence reads.
^bFor uniquely mapped fragments, both of the two reads could be uniquely mapped to a unique location in the reference genome.
^cFor singleton fragments, only one of the two reads could be mapped to the reference genome.
^dFor spliced fragments, at least one of the two reads could be mapped across a splicing junction.

ISSN: 1471-2164