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Table 1 Statistics of the number of fragments sequenced, aligned and mapped using TopHat

From: RNA-Seq analysis implicates dysregulation of the immune system in schizophrenia

Sample Sequenced fragmentsa All mapped fragments (%) Uniquely mapped fragments (%)b Singleton fragments (%)c Spliced fragments (%)d Multi-loci mapped fragments (%)
Control       
   1295-ZZ-4 10,114,082 84.5 45.2 24.9 3.8 26.1
   1295-ZZ-9 6,152,569 82.0 46.1 24.5 3.3 26.2
   1295-ZZ-13 9,263,358 86.5 50.6 25.0 3.2 21.2
Case       
   1295-ZZ-21 9,287,780 85.8 50.7 25.1 3.3 20.9
   1295-ZZ-32 8,911,007 85.4 48.5 26.3 4.0 21.2
   1295-ZZ-36 8,211,577 86.6 50.7 23.3 3.2 22.8
  1. aEach fragment has two short sequence reads.
  2. bFor uniquely mapped fragments, both of the two reads could be uniquely mapped to a unique location in the reference genome.
  3. cFor singleton fragments, only one of the two reads could be mapped to the reference genome.
  4. dFor spliced fragments, at least one of the two reads could be mapped across a splicing junction.