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Table 2 Comparison of different prioritization methods

From: GLAD4U: deriving and prioritizing gene lists from PubMed literature

  Apoptosis Cell Adhesion DNA Repair Hypertension Obesity Schizophrenia
GLAD4U Counts
AP 0.4939 0.4611 0.6670 0.3947 0.5698 0.4601
Precision at k = 50 0.8600 0.8000 0.8800 0.4800 0.7800 0.5400
Precision at k = 100 0.8300 0.7300 0.8100 0.3800 0.5500 0.4200
GLAD4U Hypergeometric
AP 0.4942 0.5723 0.8139 0.4564 0.4782 0.4280
Precision at k = 50 0.9400 0.9000 1.0000 0.5800 0.6200 0.4800
Precision at k = 100 0.9000 0.8500 0.9700 0.3900 0.5200 0.4400
EBIMed
AP 0.1567 0.1256 0.3517 0.1336 0.2673 0.2318
Precision at k = 50 0.6200 0.4800 0.8400 0.3137 0.5652 0.4423
Precision at k = 100 0.5980 0.4848 0.6700 0.2821 0.1586 0.3200
  1. AP: Average Precision