SNP types | Contigs | Singlets | ||
---|---|---|---|---|
Sub-categories | Nr. | % | Nr. | % |
Hemi-SNPs | 65147 | 43.26 | 8424 | 38.41 |
Inter-homeolog SNPs | 46780 | 31.06 | 6883 | 31.38 |
Congruent consensus | 46765 | 6881 | ||
Non-congruent consensus | 15 | 2 | ||
Simple SNPs | 18534 | 12.31 | 1419 | 6.47 |
CONS1 is the same as REF | 18007 | 1314 | ||
CONS2 is the same as REF | 525 | 105 | ||
Others | 2 | 0 | ||
Irregular SNPs | 20136 | 13.37 | 5208 | 23.74 |
Low coverage (0 to 5) in the opposing read type | 13583 | 4461 | ||
Departure from REF | 6539 | 747 | ||
More than 2 alleles in one genotype | 14 | 0 | ||
Total | 150597 | 21934 |