Learning contextual gene set interaction networks of cancer with condition specificity

BMC Genomics

Table 6 Comparison between GBM subtype-centric contextual gene sets and GBM subtype signature genes reported by Verhaak et al. [26]

Gene set	Classical		Mesenchymal		Neural		Proneural
	UP	DOWN	UP	DOWN	UP	DOWN	UP	DOWN
Subtype-centric contextual gene set	309	8	27	537	362	215	612	796
Verhaak et al.	162	0	216	0	129	0	178	0
Overlap	0		0		0		0

Table lists the number of over-expressed genes (UP) and under-expressed genes (DOWN).

ISSN: 1471-2164