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Table 2 List of genes causing CP according to MGI and OMIM databases (n = 322)

From: Systematic analysis of palatal transcriptome to identify cleft palate genes within TGFβ3-knockout mice alleles: RNA-Seq analysis of TGFβ3 Mice

Acvr1

Lhx8

Cask

ATR

FLNB

MEGF10

RPL11

Akap8

Luzp1

Cdkn1c

ATRX

FLVCR2

MID1

RPL5

Ap2b1

Meox2

Chd7

B3GALTL

FRAS1

MKS1

RPS17

Apaf1

Mmp14

Col2a1

B3GAT3

FREM2

MLL2

RPS19

Bmp7

Mmp16

Dhcr7

B9D1

FTO

MSX2

RPS7

Bnc2

Mn1

Dlx5

BCOR

G6PC3

MTHFR

SALL4

Boc

Mnt

Efnb1

BMP2

GABRB3

MUTYH

SC5DL

Cacna1s

Msc

Eya1

BMP4

GATA6

MYH3

SCARF2

Cdon

Ncoa6

Fgf10

BMPER

GCMB

NBS1

SEMA3E

Chrd

Ncor2

Fgfr1

BRAF

GDF1

NEB

SF3B4

Chuk

Osr2

Fgfr2

BRIP1

GDF6

NEK1

SHFM3

Crebbp

Pax9

Flna

BUB1B

GJA1

NIPBL

SLC26A2

Crk

Pbx1

Foxc2

CANT1

GJB2

NKX2-5

SLC35D1

Ctgf

Pcgf2

Foxe1

CASR

GLI3

NKX2-6

SMOC1

Ctnnb1

Pdgfc

Gad1

CDC6

GPC3

NSD1

SMS

Dlg1

Pdgfra

Hoxa2

CDH1

GUSB

OFC4

SOX2

Dlx1

Pds5a

Impad1

CFC1

H19

OFD1

SPECC1L

Dlx2

Pds5b

Inpp5e

CHRNA1

HCA1

ORC1

SPINT2

Ednrb

Phc1

Irf6

CHRND

HPGD

OTX2

SPTLC1

Ext1

Phc2

Kcnj2

CHRNG

HVEC

PAX3

SRY

Fgf18

Pkdcc

Msx1

CHST14

HYAL1

PAX8

STRA6

Fgf9

Prdm16

Pitx1

CHSY1

HYLS1

PEX7

TAB2

Fign

Prrx2

Prrx1

COL11A1

ICK

PHF8

TBX15

Foxf2

Ptprf

Ror2

COL11A2

IL1B

PIGL

TBX19

Foxg1

Ptprs

Runx2

COL9A2

IL1RN

PIGV

TBX4

Fst

Rad23b

Satb2

COLEC11

IMAGE

PIK3CA

TBX5

Fuz

Rfng

Shh

COMT

IRF1

PLCB4

TCTN2

Fzd1

Rspo2

Six3

CRLF1

KAL1

POLR1C

TGFβ1

Fzd2

Ryk

Sox9

DGCR2

KAT6B

POLR1D

TGFβR1

Gab1

Ryr1

Sumo1

DHCR24

KCNJ13

POMT1

TMCO1

Gli2

Sfn

Tbx1

DHODH

KIAA1289

POMT2

TMEM216

Gpr124

Shox2

Tbx22

DIS3L2

KIF22

PORCN

TMEM67

Grb2

Sim2

Tcof1

DOK7

KIF7

PQBP1

TRIM37

Gsk3b

Skor2

Tfap2a

DXS423E

KLF6

PROKR2

TRPS2

Hand2

Slc32a1

TGFβ3

DYNC2H1

KRAS

PTCH1

TWIST1

Hoxa1

Snai1

TGFβr2

EFTUD2

L1CAM

PTEN

UBB

Hs2st1

Snai2

Tp63

EPHB2

LMNA

PTH

VCAN

Ift172

Sox11

ABCD3

ERBB2

LMX1B

PTPN11

WDR65

Ift88

Sox5

ACAN

ERCC5

LRP4

PXMP3

WNT3

Inhba

Tbx10

ACTB

ESCO2

MADH3

RAI1

WNT5A

Inhbb

Tbx2

ALX1

FAM123B

MAP2K1

RAPSN

WNT7A

Itgav

Tbx3

ALX3

FAM20C

MAP2K2

RB1

WT1

Itgb8

TGFβ2

ARHGAP31

FBN1

MASP1

RBM10

ZEB2

Jag2

Tshz1

ARID1B

FGD1

MBTPS2

RECQL4

ZIC2

Jmjd6

Wdr19

ARNT

FGF8

MCOPS8

RIPK4

ZIC3

Kif3a

Zeb1

ASXL1

FGFR3

MED12

RPGRIP1L

ZMPSTE24