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Table 2 Protein groups (FunCat) that exhibited significant up- and/or down-regulation during mycoparasitic interaction in at least one of the three Trichoderma spp.*

From: Comparative transcriptomics reveals different strategies of Trichodermamycoparasitism

FunCat category FunCat number Annotation T. atroviride T. virens T. reesei
11 865 genes 12 428 genes 9 143 genes
Total involved Up down Up/down (%) Total involved Up down Up/down (%) Total involved Up down Up/down (%)
metabolism 01_05_01_01_09 2-oxoglutarate dependent dioxygenase 3 0 3 0 1 1 0 n.a. 0 0 0 n.a.
  01_04 acid phosphatase 4 4 0 n.a. 1 1 0 n.a. 1 1 0 n.a.
  01_20_05_11 PKS 5 2 3 0.7 1 0 1 0 4 2 2 1
  01_20_35_01_05 flavonol reductase 4 4 0 n.a. 1 0 1 0 0 0 0  
  01_20_35_01_05 isoflavon reductase 2 2 0 n.a. 0 0 0 0 1 0 1 0
  01_20_36 NRPS 2 0 2 0 4 0 4 0 2 0 2 0
  01_25_01 GH glycosyl hydrolase 51 10 41 0.2 5 4 1 4 36 34 2 17
  01_25_03 protease 15 13 2 6.5 3 1 2 0.5 5 2 3 0.7
  01_25_07 lipase/esterase 6 2 4 0.5 2 0 2 0 3 1 2 0.5
  01_25_07 CE carbohydrate esterase 3 1 2 0.5 0 0 0 0 3 3 0 n.a.
transcription 11_02_03_04 C2H2 transcriptional regulator 5 2 3 0.7 5 0 5 0 9 3 6 0.5
11_02_03_04 transcription factor 8 1 7 0.1 0 0 0 n.a. 0 0 0 n.a.
11_02_03_04 Zn2Cys6 transcriptional regulator 11 3 8 0.4 3 0 3 0 5 2 3 0.7
protein fate 14_07_04 GCN5-N-acetyltransferase 6 3 3 1 2 1 1 1 1 1 0 n.a.
14_07_09 SAM-dependent methyltransferase 4 4 0 n.a. 3 0 3 0 3 2 1 2
protein with binding functions 16_01 ankyrin 2 1 0 n.a. 2 0 2 0 0 0 0 n.a.
16_21 cytochrome P450 subfamily 8 6 2 3 9 0 9 0 5 4 1 4
16_21 FAD-dependent monooxygenase 11 8 3 2.7 3 2 1 2 2 0 2 0
16_21_07 GMC oxidoreductase 2 2 0 n.a. 2 0 2 0 1 0 1 0
16_21_07 short chain dehydrogenase/reductase 8 5 3 1.7 11 0 11 0 6 0 6 0
cellular transport 20_01_01 oligopeptide transporter 8 3 5 0.6 1 1 0 n.a. 3 1 2 0.5
20_01_01_01_01 iron permease 2 2 0 n.a. 0 0 0 n.a. 0 0 0 n.a.
20_01_01_07 inorganic phosphate transporter 4 4 0 n.a. 1 1 0 n.a. 1 1 0 n.a.
20_01_03 monocarboxylate transporter 3 3 0 n.a. 0 0 0 n.a. 0 0 0 n.a.
20_01_07 amino acid permease 5 1 4 0.3 3 3 0 n.a. 4 3 1 3
20_03 MFS (major facilitator superfamily) (12 TMH) 51 15 36 0.4 7 4 3 1.3 17 9 8 1.1
signal transduction mechanism 30_05_02_24 GPCR, G-protein coupled receptor 6 1 5 0.2 0 0 0 n.a. 2 0 2 0
30_05_02_24 PTH11-type GPCR 11 9 2 4.5 2 0 2 0 2 1 1 1
cell rescue and defense 32_01_05 chaperone/heat shock protein 0 0 0 n.a. 5 5 0 n.a. 4 0 4 0
32_07 AAA + −type ATPase 4 2 2 1 8 0 8 0 2 1 1 1
32_07_05 PDR-type multidrug transporter 3 3 1 3 0 0 0 n.a. 2 1 1 1
32_07_05 ABC transporter 0 0 0 n.a. 2 0 2 0 2 0 2 0
32_07_05 MDR (multidrug resistance-associated protein) 0 0 0 n.a. 2 0 2 0 1 0 1 0
32_07_07_03 glutathione S-transferase 3 3 0 n.a. 4 0 4 0 2 0 2 0
subcellular localization 70_01 cell wall protein 5 0 5 0 2 0 2 0 4 2 2 1
70_27 SSCR (small secreted cysteine rich protein) 8 8 0 n.a. 6 0 6 0 0 0 0 n.a.
cell fate 40 HET protein 2 2 0 n.a. 0 0 0 n.a. 1 0 1 0
  1. *ratio values cannot be given when denominator is zero; n.a. means not applicable.