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Table 3 Clusters of nonrandomly distributed genes in T. atroviride, T. virens and T. reesei that are involved in mycoparasitism

From: Comparative transcriptomics reveals different strategies of Trichodermamycoparasitism

Scaffold T. atroviride T. virens T. reesei
Gene area* Density** Gene area* Density** Gene area* Density**
1 44-47 3/4 583-618 6/36 62-68 3/7
  69-87 7/19 974-990 4/17 129-135 4/7
  1111-1119 4/9    439-452 4/14
  1331-1340 3/10    632-639 3/8
  1717-1726 3/10    734-753 5/20
2 85-93 3/9 3-27 7/25 43-55 4/13
  306-313 3/8 134-148 3/15   
  649-663 6/15 253-274 4/22   
  936-942 3/7 665-695 4/31   
  998-1000 3/3     
  1031-1039 3/9     
  1039-1054 6/16     
3 140-143 4/4 788-792 4/5 4-27 5/24
  189-201 10/13    333-342 3/10
  691-698 3/8    406-411 4/6
  771-773 3/3     
4 37-45 4/9 20-24 4/5 34-45 3/12
  340-349 3/10 242-255 3/14 333-339 3/7
  593-614 6/20 327-346 3/20   
5 12 - 24 7/13 252-262 3/11 209-226 4/14
  97-104 3/8    235-248 4/14
  286-302 5/17    448-463 5/16
  389-412 8/22     
  425-427 3/3     
6 264-268 4/5 2-21 3/20 24-51 6/28
  354-357 3/4    128-139 3/12
  461-483 7/23     
7 178-187 4/10 6-9 3/4 59-72 5/14
  404-408 3/5    286-292 3/7
  484-509 8/26     
  524-532 5/9     
  546-559 4/14     
8 117-129 6/13    276-290 3/15
  155-165 6/11     
  185-189 3/5     
9 173-188 6/16    26-44 4/19
  198-212 4/15     
  489-498 4/10     
10    242-262 3/21 74-83 3/10
      185-187 3/3
      262-272 3/11
      316-344 5/29
11 399-411 5/13     
  462-477 9/16     
12 386-391 3/6    7-11 3/5
  466-468 3/3    160-174 3/15
13 77-85 3/9 277-281 3/5   
  132-139 3/8     
  275-281 3/7     
    219-229 3/11 1-14 3/15
15 20-25 4/6     
  169-174 3/6     
16 55-61 3/7     
17 78-85 3/8    59-86 6/28
  165-175 4/11     
18 45-62 6/18 1-7 5/7   
  135-138 3/4     
19 4 of 12 3/9 107-113 4/7 32-37 3/6
  68-82 6/15     
  141-155 4/15     
20 2-11 5/10    94/100 3/7
21    21-41 3/21 116-120 4/5
    100-109 3/10   
22    101-114 4/15 80-109 7/30
24      29-41 4/13
26    53-63 4/11   
27      40-56 4/17
28    32-51 3/20 68-74 3/7
      98-122 5/25
29      68-79 3/12
      99-113 6/13
32      55-62 3/8
34    3-13 10/11 26-30 3/5
35    32-51 4/20   
45      7-20 3/14
54    1-8 5/8   
  1. * indicates the area on the scaffold in which the cluster was identified, given by the numbers of the first and the last genes on the scaffold. ** the ratio of significantly up- or down-regulated genes to the total number of genes in the cluster.