Table 5 Hits shared between CGH and coverage data using the Poisson-Gamma (PG) model, the FREEC software, and the cn.MOPS approach
Strain | Methodology | Deletions | Amplifications | Overall |
|---|---|---|---|---|
HB3 | FREEC | â | â | 195/210 (92.9%) |
| Â | cn.MOPS | â | â | 214/348 (61.5%) |
| Â | PG with Îł=99% | â | â | 431/568 (75.9%) |
| Â | PG with Îł=99.9% | â | â | 288/365 (78.9%) |
DD2 | FREEC | â | â | 792/831 (95.3%) |
| Â | cn.MOPS | â | â | 746/840 (88.8%) |
| Â | PG with Îł=99% | â | â | 854/957 (89.0%) |
| Â | PG with Îł=99.9% | â | â | 826/899 (91.9%) |
7G8 | FREEC | 89/154 (57.8%) | 285/470 (60.6%) | 374/624 (59.9%) |
| Â | cn.MOPS | 91/477 (19.1%) | 236/1185 (19.9%) | 327/1662 (19.7%) |
| Â | PG with Îł=99% | 164/243 (67.5%) | 216/343 (63.0%) | 380/586 (64.9%) |
| Â | PG with Îł=99.9% | 153/205 (75.6%) | 176/215 (81.9%) | 329/420 (78.3%) |
GB4 | FREEC | 32/82 (39.0%) | 4/16 (25.0%) | 36/98 (36.7%) |
| Â | cn.MOPS | 77/197 (39.1%) | 28/273 (10.3%) | 105/470 (22.3%) |
| Â | PG with Îł=99% | 152/262 (59.0%) | 24/108 (22.2%) | 176/370 (47.6%) |
| Â | PG with Îł=99.9% | 148/253 (58.5%) | 14/47 (29.8%) | 162/300 (54.0%) |