Identification and functional analysis of cytochrome P450 complement in Streptomyces virginiaeIBL14

Li, Zhi-Zhen; Li, Xiao-Fei; Yang, Wei; Dong, Xiang; Yu, Jie; Zhu, Shu-Liang; Li, Man; Xie, Li; Tong, Wang-Yu

doi:10.1186/1471-2164-14-130

BMC Genomics

Table 1 Putative cytochrome P450s in S. virginiae IBL14 with their closest homologs

From: Identification and functional analysis of cytochrome P450 complement in Streptomyces virginiaeIBL14

ID^a	Size^b	Best matches in the database
ID^a	Size^b	Species	Protein identifier	CYP family	AA overlap^d	identity^e%
Svu001	464	Streptomyces sp. Mg1	ZP_05001937	new	598	66
Svu001	464	Photobacterium profundum 3TCK	ZP_01217946		113	25
Svu002	361	Streptomyces virginiae	ABR68806	105 L	134	100
Svu002	361	Streptomyces clavuligerus ATCC 27064	ZP_06769587		93.2	66
Svu003	439	Streptomyces venezuelae ATCC 10712	CCA59424	105C	608	77
Svu003	439	Streptomyces cattleya NRRL 8057	YP_004920090	105C	553	70
Svu004	398	Streptomyces virginiae	ABR68806	105 L	794	99
Svu004	398	Streptomyces sp. ACT50-5	BAG16627		529	69
Svu005	400	Streptomyces sp. C	ZP_07285089	105D	595	74
Svu005	400	Streptomyces avermitilis MA-4680	BAC75180	105D7	529	69
Svh01	399	Streptomyces virginiae	ABR68805	105C1	797	99
Svh01	399	Streptomyces viridochromogenes DSM 40736	ZP_07307444	105	703	87
Svu006	403	Streptomyces virginiae	ABR68807	107 L14	713	99
Svu006	403	Streptomyces sp. C	ZP_07284721	107 L14	611	87
Svu007	351	Streptomyces sp. C	ZP_07290554	107E	609	87
Svu007	351	Streptomyces violaceusniger Tu 4113	YP_004815015		540	77
Svu008	406	Streptomyces sp. C	ZP_07285026	107 L14	604	77
Svu008	406	Streptomyces sp. Mg1	ZP_04997607	107 L14	584	76
Svu009	415	Streptomyces sp. C	ZP_07286517	107 L	727	85
Svu009	415	Streptomyces sp. Mg1	ZP_04999247	107 L	484	59
Svu010	396	Streptomyces sp. Mg1	ZP_04997607	107 L14	578	74
Svu010	396	Streptomyces sp. C	ZP_07285026	107 L14	556	72
Svu011	405	Streptomyces sp. C	ZP_07287693	107 L	728	91
Svu011	405	Streptomyces clavuligerus ATCC 27064	ZP_05005324	107 L	601	75
Svu012	430	Streptomyces sp. C	ZP_07287209	107 L	808	92
Svu012	430	Streptomyces sp. Mg1	ZP_05000207	107 L	780	91
Svu013	396	Streptomyces sp. C	ZP_07287353	107 L	578	75
Svu013	396	Streptomyces hygroscopicus subsp. jinggangensis 5008	AEY86095		383	54
Svu014	395	Streptomyces sviceus ATCC 29083	ZP_06921933	107 L	961	80
Svu014	395	Streptomyces venezuelae ATCC 10712	CCA53921	107 L	549	79
Svu015	406	Streptomyces sp. Mg1	ZP_05001939	107 L	667	80
Svu015	406	Streptomyces scabiei 87.22	YP_003488837	107 L	640	77
Svu016	406	Amycolatopsis editerranei U32	YP_003767608	107 M	482	63
Svu016	406	Actinomadura hibisc	BAA23153		387	55
Svu017	368	Streptomyces avermitilis MA-4680	NP_823237	197A1	436	64
Svu017	368	Streptomyces scabiei 87.22	YP_003487606		389	59
Svu018	393	Streptomyces venezuelae ATCC 10712	CCA55152	121A	509	67
Svu018	393	Mycobacterium tuberculosis 02_1987	ZP_06504929	121A	464	57
Svu019	421	Streptomyces sp. C	ZP_07287311	124B	782	94
Svu019	421	Streptomyces pristinaespiralis ATCC 25486	ZP_06909795	124B	566	70
Svu020	416	Streptomyces sp. C	ZP_07289557	147A	731	91
Svu020	416	Streptomyces peucetius ATCC 27952	CAE53704	147A	667	79
Svu021	421	Streptomyces sp. C	ZP_07290439	152A	515	71
Svu021	421	Streptomyces sp. SirexAA-E	YP_004806454	152A	429	58
Svu022	412	Streptomyces sp. Mg1	ZP_05002011	154H	742	91
Svu022	412	Streptomyces sp. SirexAA-E	YP_004804189	154H	666	83
Svu023	409	Streptomyces sp. C	ZP_07285064	157A	773	93
Svu023	409	Streptomyces sp. Mg1	ZP_05002010	157A	734	88
Svu024	450	Streptomyces sp. Mg1	ZP_05002596	157C	723	82
Svu024	450	Streptomyces hygroscopicus ATCC 53653	ZP_07300920	157C	574	64
Svu025	89	Streptomyces tubercidicus	AAT45286	185A1	85.9	47
Svu025	89	Actinosynnema mirum DSM 43827	YP_003102184	185A	84.7	51
Svu026	409	Streptomyces violaceusniger Tu 4113	YP_004813101	191A	313	44
Svu026	409	Rhodococcus opacus B4	YP_002781958		300	43
Svu027	398	Streptomyces sp. C	ZP_07286547	191A	756	92
Svu027	398	Streptomyces sp. Mg1	ZP_04998169	191A	733	89
Svu028	446	Streptomyces sp. Mg1	ZP_04997583	191A	699	88
Svu028	446	Streptomyces sp. C	ZP_07290135	191A	692	90
Svu029	476	Singulisphaera acidiphila DSM 18658	ZP_09568426	197A	199	33
Svu029	476	Streptomyces roseosporus NRRL 11379	ZP_04712663	197A	191	32
Svu030	447	Streptomyces sp. C	ZP_07289871	197B	713	82
Svu030	447	Streptomyces sp. Mg1	ZP_05001362	197B	680	77
Svu031	710	Streptomyces sp. C	ZP_07284739	197B	353	79
Svu031	710	Streptomyces clavuligerus ATCC 27064	ZP_05006237		350	55
Svu032	416	Streptomyces flavogriseus ATCC 33331	YP_004921083	247A	693	81
Svu032	416	Frankia alni ACN14a	YP_712777	247A	573	70

^a The name of the putative CYPs in S. virginiae IBL14.
^b Amino acid number of putative CYPs.
^c Closest homologs in Genbank and the family classification of CYPs searched in CYPED.
^d Number of amino acid overlap, which exceeds the protein size, is due to the introduction of gaps during BLAST comparison.
^e The highest percent identity for a set of aligned segments to the same subject sequence.

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ISSN: 1471-2164

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