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Figure 4 | BMC Genomics

Figure 4

From: Quality assessment and data handling methods for Affymetrix Gene 1.0 ST arrays with variable RNA integrity

Figure 4

Expression profiles of samples clustered using average linkage hierarchical clustering. a) Sample clustering after preprocessing. b) Sample clustering after preprocessing and correction for batch and quality using ComBat. Samples that were flagged during quality assessment are highlighted in red. The dissimilarity measure (height) used was 1- Pearson correlation of the log2-transformed expression values.

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