Table 1 Array quality assessment summary
Sample ID | RIN | RNA 260/230 ratio | GNUSE | probe-level CV | PM-BG | Array weight |
|---|---|---|---|---|---|---|
44N | 3 | 2.41 | fail (1) | fail (3) | fail (1) | 0.22 (1) |
33T | 2.8 | 2.08 | fail (2) | fail (5) | fail (2) | 0.28 (2) |
60N | 3.2 | 2.03 | fail (3) | fail (1) | fail (3) | 0.42 (3) |
63T | 3 | 2.2 | fail (4) | fail (4) | pass | 0.59 (6) |
10T | 3.2 | 2.18 | fail (5) | fail (2) | fail (4) | 0.60 (7) |
56T | 3.3 | 1.87 | fail (6) | fail (10) | fail (5) | 0.42 (4) |
41T | 4.2 | 2.21 | fail (7) | fail (9) | pass | 0.78 (8) |
13N | 4.6 | 2.24 | pass | fail (7) | pass | 0.82 (9) |
15T | 4.8 | 2.15 | pass | fail (8) | pass | 1.07 (15) |
4N | 2.6 | 1.62 | pass | pass | pass | 0.44 (5) |
18N | 7.1 | 1.66 | pass | pass | pass | 0.83 (10) |
8T | 8.5 | 2.16 | pass | pass | pass | 0.85 (11) |
56N | 6.5 | 1.94 | pass | pass | pass | 0.95 (12) |
20T | 7.4 | 1.6 | pass | pass | pass | 1.02 (13) |
44T | 6.9 | 1.72 | pass | pass | pass | 1.03 (14) |
11T | 8.6 | 2.16 | pass | pass | pass | 1.07 (16) |
60T | 6.4 | 1.64 | pass | pass | pass | 1.09 (17) |
14T | 6.4 | 1.76 | pass | pass | pass | 1.09 (18) |
13T | 8.3 | 2 | pass | pass | pass | 1.11 (19) |
23T | 7 | 2.17 | pass | pass | pass | 1.18 (20) |
8N | 7.1 | 2.22 | pass | pass | pass | 1.25 (21) |
18T | 7.4 | 1.85 | pass | pass | pass | 1.26 (22) |
33N | 8.1 | 1.82 | pass | pass | pass | 1.45 (23) |
34T | 8 | 2.25 | pass | pass | pass | 1.49 (24) |
11N | 6.8 | 1.94 | pass | pass | pass | 1.50 (25) |
20N | 7.3 | 2.11 | pass | pass | pass | 1.50 (26) |
63N | 7.5 | 2.13 | pass | pass | pass | 1.61 (27) |
23N | 8.4 | 2.02 | pass | pass | pass | 1.61 (28) |
34N | 8.3 | 2.21 | pass | pass | pass | 1.61 (29) |
14N | 8.1 | 2.36 | pass | pass | pass | 1.74 (30) |
41N | 5.4 | 2.07 | pass | pass | pass | 1.76 (31) |
10N | 7.3 | 1.78 | pass | pass | pass | 1.78 (32) |
15N | 6.9 | 2.16 | pass | pass | pass | 1.90 (33) |
4T | 8.4 | 2.25 | pass | pass | pass | 2.14 (34 |