Biclustering for the comprehensive search of correlated gene expression patterns using clustered seed expansion

BMC Genomics

Table 3 Summary statistics of biclustering algorithms for the yeast stress dataset

Method	Count	Average \|I x J\|	Gene cov.	Condition cov.	Cell cov.
BICLIC	14791	2249.3	1	1	0.999
BICLIC	(11172)	(7.2)	(0.905)	(1)	(0.109)
BCCA	8163	2936.8	0.776	1	0.317
CPB	3634	8413.6	0.512	1	0.185
QUBIC	2146	847.4	0.884	0.746	0.112

Values in parentheses denote the values of seed biclusters of BICLIC. The columns “Count”, “Average |I x J|”, “Gene cov.”, “Condition cov.”, and “Cell cov.” show the numbers of biclusters, average sizes of biclusters, coverage of biclusters in the gene dimension, coverage of biclusters in the condition dimension, and coverage of biclusters for all cells in the matrix.

ISSN: 1471-2164