Table 1 Comparison of SOAPdenovo and Trinity assembly results
From: De novo assembly and characterization of Camelina sativatranscriptome by paired-end sequencing
SOAPdenovo | Trinity | |
|---|---|---|
Total length (nt) | 26,651,285 | 71,935,591 |
Total number (n) | 83,493 | 103,196 |
N50 | 346 | 976 |
Mean length (nt) | 319 | 697 |
100–500 nt | 72,616 | 53,377 |
500–1000 nt | 9,006 | 27,983 |
1000–1500 nt | 1,339 | 12,228 |
1500–2000 nt | 354 | 5,623 |
≥ 2000 nt | 178 | 3,985 |