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Table 1 Comparison of SOAPdenovo and Trinity assembly results

From: De novo assembly and characterization of Camelina sativatranscriptome by paired-end sequencing

  SOAPdenovo Trinity
Total length (nt) 26,651,285 71,935,591
Total number (n) 83,493 103,196
N50 346 976
Mean length (nt) 319 697
100–500 nt 72,616 53,377
500–1000 nt 9,006 27,983
1000–1500 nt 1,339 12,228
1500–2000 nt 354 5,623
≥ 2000 nt 178 3,985