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Table 3 Genes selected, based on RPKM, from some biological processes induced in soybean roots inoculated with strain CPAC 15 of B. japonicum

From: Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicumstrain CPAC 15

Biological process Genes Description RPKMa Noreads
Signaling Glyma16g29220.1 LRR (Leucine rich repeat) 210,781 158,479
Glyma03g32700.2 LRR (Leucine rich repeat) 1,943.56 1,149
Glyma13g03910.1 Calmodulin 2,424.67 1,940
Glyma05g13900.1 Calmodulin 1,743 2,510
Glyma20g10820.1 Calmodulin 1,470.5 2,522
Response to stimulus Glyma20g23080.1 Calreticulin 1,823.09 5,531
Glyma15g02220.1 PDR (Pleiotropic drug resistance) 1,735.93 384
Glyma08g29090.1 Glycoside hydrolase 19 1,177.12 1,319
Glyma18g51980.1 Glycoside hydrolase 19 1,027.26 1,122
Transport Glyma20g32000.1 Aquaporin 1,377.3 3,533
Glyma10g35520.2 Aquaporin 1,613.69 3,245
Glyma14g06680.5 Aquaporin 2,989.98 9,195
Glyma12g29510.2 Aquaporin 1,744.05 4,347
Glyma12g08040.1 Aquaporin 5,022.48 5,497
Glyma05g32620.1 ABC transport 1,834.5 531
Glyma08g00280.1 ABC transport 1,053.41 949
Glyma08g28190.1 Amino acid transporter 1,734.53 4,473
Glyma18g51220.1 Amino acid transporter 2,511.83 5,376
Glyma20g33000.1 Amino acid transporter 1,273.41 1,325
Glyma10g32750.1 Oligopeptide transporter 2,462.59 5,684
Glyma19g45260.1 Potassium transporter 6,052.79 4,615
Potassium transporter 1,865.16 1,468
Potassium transporter 1,636.9 2,268
Potassium transporter 2,088.8 3,890
  Glyma03g31310.1 Sulfate transporter 1,421.28 1,314
  1. a Reads per kilobase of exon per million mapped reads.