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Table 1 The gene prediction of N. lugens pattern recognition molecules

From: The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens

Predicted gene GenBank ID Locus Size (aa) Exon Orientation UTR Best match Similarity Mw (KDa) pI
PGRP-LB KC355211 scaffold1556 216 3 - no D. melanogaster 58% 24.01 6.03
PGRP-LC KC355212 scaffold1031 359 3 - no D. melanogaster 59% 39.51 7.12
GRP1 KC355197 scaffold991 550 10 + no L. migratoria 51% 62.34 5.44
GRP2 KC355198 scaffold5509 499 6 + no R. prolixus 57% 56.70 6.84
GRP3 KC355199 scaffold991 579 14 + no R. prolixus 60% 65.83 5.69
GRP4 KC355200 scaffold2822 362 11 - no L. migratoria 57% 41.89 5.97
GRP5 KC355201 scaffold1504 366 9 - no L. migratoria 57% 42.15 5.01
GRP6 KC355202 scaffold991 156 3 + no B.mori 64% 17.64 5.29
GRP7 (partial) KC355203 scaffold412 455 16 + no R. prolixus 58% 51.44 6.42
  1. The genomic organization of exons and introns of the genes for pattern recognition proteins is predicted based on the mRNA-genome alignments at the NCBI spideyweb (http://www.ncbi.nlm.nih.gov/spidey/spideyweb.cgi). PGRP: Peptidoglycan recognition protein; GRP: β-glucan recognition protein. Locus, size and orientation indicate the location on scaffold, predicted amino acids (aa) and the transcription orientation of the genes. UTR: Untranslated regions. Molecular weight (Mw) and isoelectric point (pI) are analyzed using Compute pI/MW tool (http://web.expasy.org/compute_pi/). D. melanogaster, Drosophila melanogaster; L. migratoria, Locusta migratoria; R. prolixus, Rhodnius prolixus; B.mori, Bombyx mori.