The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens

BMC Genomics

Table 1 The gene prediction of N. lugens pattern recognition molecules

Predicted gene	GenBank ID	Locus	Size (aa)	Exon	Orientation	UTR	Best match	Similarity	Mw (KDa)	pI
PGRP-LB	KC355211	scaffold1556	216	3	-	no	D. melanogaster	58%	24.01	6.03
PGRP-LC	KC355212	scaffold1031	359	3	-	no	D. melanogaster	59%	39.51	7.12
GRP1	KC355197	scaffold991	550	10	+	no	L. migratoria	51%	62.34	5.44
GRP2	KC355198	scaffold5509	499	6	+	no	R. prolixus	57%	56.70	6.84
GRP3	KC355199	scaffold991	579	14	+	no	R. prolixus	60%	65.83	5.69
GRP4	KC355200	scaffold2822	362	11	-	no	L. migratoria	57%	41.89	5.97
GRP5	KC355201	scaffold1504	366	9	-	no	L. migratoria	57%	42.15	5.01
GRP6	KC355202	scaffold991	156	3	+	no	B.mori	64%	17.64	5.29
GRP7 (partial)	KC355203	scaffold412	455	16	+	no	R. prolixus	58%	51.44	6.42

The genomic organization of exons and introns of the genes for pattern recognition proteins is predicted based on the mRNA-genome alignments at the NCBI spideyweb (http://www.ncbi.nlm.nih.gov/spidey/spideyweb.cgi). PGRP: Peptidoglycan recognition protein; GRP: β-glucan recognition protein. Locus, size and orientation indicate the location on scaffold, predicted amino acids (aa) and the transcription orientation of the genes. UTR: Untranslated regions. Molecular weight (Mw) and isoelectric point (pI) are analyzed using Compute pI/MW tool (http://web.expasy.org/compute_pi/). D. melanogaster, Drosophila melanogaster; L. migratoria, Locusta migratoria; R. prolixus, Rhodnius prolixus; B.mori, Bombyx mori.

ISSN: 1471-2164