The genome- and transcriptome-wide analysis of innate immunity in the brown planthopper, Nilaparvata lugens

BMC Genomics

Table 2 The genomic prediction of N. lugens Toll family

Predicted gene	GenBank ID	Locus	Size (aa)	Exon	Orientation	UTR	LRR region	Transmemebrane and LIR	Best match	Similarity	Mw (KDa)	pI
Toll-1	KC355234	scaffold1767	1156	6	-	no	14	have	P. h. corporis	61%	131.3	6.16
Toll-6	KC355235	scaffold1818	1254	2	-	no	21	have	T. castaneum	85%	142.5	5.86
Toll-7	KC355236	scaffold1910	1325	1	+	no	21	have	P. h. corporis	79%	150.8	6.06
Toll-8	KC355237	scaffold90	1296	3	+	no	21	have	P. h. corporis	81%	147.7	5.48
Toll-10	KC355238	scaffold569	1302	1	+	no	23	have	P. h. corporis	73%	146.4	5.57
Toll-13	KC355193	scaffold2123	691	2	-	have	14	no	A. mellifera	67%	77.13	5.22

The genomic organization of exons and introns of the genes for pattern recognition proteins is predicted based on the mRNA-genome alignments at the NCBI spideyweb (http://www.ncbi.nlm.nih.gov/spidey/spideyweb.cgi). LRR: leucine-rich repeats; TIR: Toll-interleukin homolog domain. Molecular weight (Mw) and isoelectric point (pI) are analyzed using Compute pI/MW tool (http://web.expasy.org/compute_pi/). P. h. corporis, Pediculus humanus corporis; T. castaneum , Tribolium castaneum; A. mellifera, Apis mellifera.

ISSN: 1471-2164