Table 1 Summary of Illumina single-end read sequence data and de novo assembly; perfect di-, tri- and tetra-nucleotide SSR loci for Brachiaria ruziziensis
All contigs | Only contigs >200 bp | |
|---|---|---|
Reads # | 186,764,108 | 186,764,108 |
Read average length bp | 76 | 76 |
Reads bp | 14,194,072,208 | 14,194,072,208 |
Mapping Parameters (LF - SIM) | 0.5 - 0.8 | 1.0 - 1.0 |
Reads Matched | 179,690,233 | 68,644,823 |
Matched bp | 13,656,457,708 | 5,217,006,548 |
Contigs # | 1,113,797 | 419,751 |
N50 | 585 | 954 |
Contigs bp | 367,553,010 | 277,588,081 |
Average coverage | 37x | 18,8x |
Contig average length | 330 | 661 |
Perfect microsatellite sequences | 139,098 | 85,567 |
Di-nucleotides | 13,127 | 3,919 |
Tri-nucleotides | 113,098 | 72,902 |
Tetra-nucleotides | 12,892 | 8,746 |