Skip to main content

Table 1 N. furzeri transcriptome libraries and sequencing methods

From: The transcript catalogue of the short-lived fish Nothobranchius furzeriprovides insights into age-dependent changes of mRNA levels

Library

Specimens used for RNA-isolation

Sequencing technology

Number of reads

Average length (bp)

Total length (Mb)

1

one male GRZ, 9 weeks, whole body; normaliseda

Sanger

131,808

734

97

2

one male GRZ, 10 weeks, whole body; normaliseda

454/Roche GS-FLX

751,885

223

168

3

one male GRZ, 10 weeks, whole body

454/Roche GS-FLX

415,426

225

94

4

six male and female GRZ, 8 weeks, whole body; normalisedb

454/Roche GS-Titanium

2,351,236

369

869

5

three GRZ, 1 week, whole body

Solexa/Illumina, 2 x 150 bp

89,730,910

151

6,774

6

five male GRZ, 5 weeks, skin

Solexa/Illumina, 2 x 101 bp

55,410,042

101

5,596

  

Solexa/Illumina, 76 bp

33,947,044

76

2,579

7

five male GRZ, 5 weeks, brain

Solexa/Illumina, 2 x 101 bp

60,997,820

101

6,161

  

Solexa/Illumina, 76 bp

36,117,265

76

2,744

8

three male GRZ, 14 weeks, skin

Solexa/Illumina, 76 bp

35,963,921

76

2,733

9

three male GRZ, 14 weeks, brain

Solexa/Illumina, 76 bp

27,369,310

76

2,080

10

four male MZM-0403, 5 weeks, skin

Solexa/Illumina, 76 bp

31,727,935

76

2,411

11

five male MZM-0403, 5 weeks, brain

Solexa/Illumina, 76 bp

34,720,289

76

2,638

12

five male MZM-0403, 31 weeks, skin

Solexa/Illumina, 76 bp

30,268,649

76

2,300

13

three male MZM-0403, 31 weeks, brain

Solexa/Illumina, 76 bp

31,423,327

76

2,388

   

467,676,512

 

39,632

  1. aNormalisation was done by Evrogen.
  2. bNormalisation was done by Vertis.