Table 6 Significant differentially expressed transcripts located in each of the QTL regions
From: Transcriptome analysis of rice root heterosis by RNA-Seq
Trait | Chr. | Interval | Gene definition | RAP locus |
|---|---|---|---|---|
RL | 3 | RM282-RM6283 | SUS | Os03t0340500, Os03t0401300 |
RDW | 3 | RM168-RM143 | EGase | Os03t0736300 |
RL | 4 | RM5953-RM3317 | SUS | Os04t0249500 |
RD | 5 | RM3800-RM3870 | PP2C | Os05t0457200 |
RDW | 5 | RM3870-RM6972 | PDC | Os05t0469600, Os05t0469800 |
RDW | 5 | RM6972-RM274 | PFK | Os05t0524400 |
RV | 6 | RM6734-RM1163 | RR-B | Os06t0183100 |
RL | 7 | RM234-RM118 | SnRK2 | Os07t0622000 |
RL, TRL, RSA, RV, RTN, RDW | 7 | RM180-RM5436 | CesA | Os07t0208500, Os07t0208533, Os07t0252400 |
RFW | 10 | RM6100-RM3773 | PDC | Os10t0480900 |
GYD, NP, NSP, HD | 7 | RM180-RM5436 | CesA | Os07t0208500, Os07t0208533, Os07t0252400 |
HD | 3 | RM148-RM85 | CesA | Os03t0837100 |
GYD | 5 | RM6972-RM274 | PFK | Os05t0524400 |