Table 3 Summary of the Upland cotton BIBAC end sequences (BESs) generated and their exon and SSR contents
| Total BESs sequenced | 10,752 |
|---|---|
| Q20 (50–842 bp) | 9,711 |
| Paired-ends | 4,441 |
| GC level | 35.50% |
| Total length | 3,842,009 bp |
| Average read of BESs | 395.63 bp |
| Number of exons: | |
| GenScan | 3,022 |
| GeneMark | 2,912 |
| Microsatellite (di, tri, tetra, penta and hexa): | |
| Four or more repeat units | 1,269 |
| Five or more repeat units | 313 |
| Six or more repeat units | 103 |