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Table 2 The 50 most abundant transcripts in L. major promastigotes

From: The transcriptome of Leishmania majorin the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq

Transcript Genea FPKMb(±SD) Remarksc
LmjF.28.T2770 LmjF28.2770 1357.39 ± 5.12 heat-shock protein (HSP70; gene HSP70-II)
LmjF.35.T0240 LmjF35.0240 1034.68 ±12.39 ribosomal protein L30
LmjF.28.T2780 LmjF28.2780 987.24 ± 4.45 heat-shock protein hsp70 (HSP70; gene HSP70-I)
LmjF.36.T1940 LmjF36.1940 952.68 ± 4.37 inosine-guanosine transporter (NT2)
LmjF.31.T0900 LmjF31.0900 809.07 ± 7.12 hypothetical protein, conserved
LmjF.28.T2205 LmjF28.2205 792.33 ± 8.16 ribosomal protein S29
LmjF.35.T2220 LmjF35.2220 780.12 ± 5.99 kinetoplastid membrane protein-11 (KMP11)
LmjF.19.T0983 Non-annotated 674.85 ± 5.26 -
LmjF.35.T0600 LmjF35.0600 672.00 ± 5.81 ribosomal protein L18a
LmjF.06.T0010 LmjF06.0010 666.85 ± 8.31 histone H4
LmjF.35.T3800 LmjF35.3800 617.33 ± 7.36 ribosomal protein L23
LmjF.36.T3620 LmjF36.3620 616.48 ± 5.07 hypothetical protein, conserved
LmjF.35.T2210 LmjF35.2210 603.26 ± 4.69 kinetoplastid membrane protein-11 (KMP11)
LmjF.28.T2460 LmjF28.2460 596.61 ± 6.27 ribosomal protein S29
LmjF.20.T1285 Non-annotated 560.05 ± 5.48 -
LmjF.31.T0964 Non-annotated 539.44 ± 5.07 -
LmjF.31.T0895 Non-annotated 524.19 ± 10.51 -
LmjF.35.T3290 LmjF35.3290 514.13 ± 5.67 ribosomal protein L31
LmjF.13.T0570 LmjF13.0570 496.01 ± 5.02 ribosomal protein S12
LmjF.35.T3790 LmjF35.3790 493.33 ± 8.18 ribosomal protein L23
LmjF.35.T4191 Non-annotated 490.94 ± 5.15 -
LmjF.35.T3760 LmjF35.3760 483.03 ± 7.04 ribosomal protein L27A/L29
LmjF.30.T3340 LmjF30.3340 482.87 ± 5.89 ribosomal protein L9
LmjF.35.T2050 LmjF35.2050 464.76 ± 5.1 ribosomal protein L32
LmjF.08.T0640 LmjF08.0640 452.92 ± 3.18 hypothetical protein
LmjF.14.T0850 LmjF14.0850 451.18 ± 3.65 calpain-like cysteine peptidase
LmjF.35.T1910 LmjF35.1910 448.56 ± 5.89 ribosomal protein L15
LmjF.35.T0420 LmjF35.0420 446.58 ± 5.12 ribosomal protein S3A
LmjF.35.T1920 LmjF35.1920 446.57 ± 9.14 ribosomal protein L36
LmjF.25.T0910 LmjF25.0910 436.47 ± 3.61 cyclophilin a
LmjF.35.T3780 LmjF35.3780 427.63 ± 4.95 ribosomal protein L27A/L29
LmjF.28.T2740 LmjF28.2740 426.82 ± 4.82 activated protein kinase c receptor
LmjF.13.T0450 LmjF13.0450 425.12 ± 4.7 hypothetical protein, conserved
LmjF.20.T1280 LmjF20.1280 424.16 ± 3.22 small myristoylated protein 4
LmjF.31.T0966 Non-annotatedd 419.44 ± 8.52 hypothetical protein, conserved
LmjF.28.T2750 LmjF28.2750 414.41 ± 4.15 activated protein kinase c receptor
LmjF.31.T1170 LmjF31.1170 414.01 ± 3.8 hypothetical protein
LmjF.35.T0410 LmjF35.0410 411.95 ± 4.52 ribosomal protein S3A
LmjF.15.T1240 LmjF15.1240 410.71 ± 3.38 nucleoside transporter 1
LmjF.24.T2230 LmjF24.2230 409.67 ± 3.11 hypothetical predicted multi-pass transmembrane protein
LmjF.35.T3280 LmjF35.3280 406.24 ± 5.44 ribosomal protein L31
LmjF.35.T0400 LmjF35.0400 403.61 ± 4.43 ribosomal protein S3A
LmjF.24.T1280 LmjF24.1280 403.46 ± 3.63 amastin-like surface protein
LmjF.13.T0370 LmjF13.0370 403.05 ± 3.84 alpha tubulin
LmjF.35.T1670 LmjF35.1670 403.05 ± 6.46 ribosomal protein L26
LmjF.13.T0360 LmjF13.0360 403.04 ± 3.84 alpha tubulin
LmjF.13.T0350 LmjF13.0350 399.2 ± 3.82 alpha tubulin
LmjF.13.T0380 LmjF13.0380 399.06 ± 3.82 alpha tubulin
LmjF.33.T3230 LmjF33.3230 396.93 ± 7.5 ribosomal protein L44
LmjF.13.T0330 LmjF13.0330 396.86 ± 3.81 alpha tubulin
  1. a GeneDB identification code.
  2. b FPKM, fragments (reads) per kilobase per million mapped reads.
  3. c Hypothetical: predicted by informatics tools; conserved: present in other trypanosomatids (i.e. T. brucei and T. cruzi genome).
  4. d This transcript has 97% of sequence identity with gene LmjF31.0900.