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Table 11 Identification of DNA motifs in CUX1 binding sites with the ATCRATconsensus

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Motif Reverse complement E-Value Transcription factors
ATCRAT ATYGAT 3.5E-735 Cux1, Pbx1
GGGYGGGR YCCCRCCC 4.8E-35 Klf4, Klf7, Sp1, Sp4, Zfp281, Zfp740, Egr1
AAATAHW WDTATTT 1.9E-27 -
CTBCCTS SAGGVAG 6.30E-26 Spi1, Stat3, Fev, Sfpi1
CWCCDCC GGHGGWG 6.60E-23 -
DRGGAAA TTTCCYH 6.20E-21 -
BSTGTGTG CACACASV 1.20E-20 -
RGAGAAR YTTCTCY 2.60E-14 -
ACRCWG CWGYGT 3.70E-14 -
RAAACAAA TTTGTTTY 1.90E-11 Sox11, Sox4, Foxd3, Foxi1
  1. 10 Most enriched DNA motifs found in CUX1 binding sites that containthe ATCRAT CUX1 consensus. The DNA sequences considered in thisanalysis correspond to the entire regions bound by CUX1 as definedin the microarray. The size of bound regions varies from 149 to1107 bp (95th percentile) and is 532 bp onaverage. Proteins with DNA binding motifs highly similar to themotifs are listed in the rightmost column. K = G/T,M = A/C, R = A/G, Y = C/T,S = C/G, W = A/T, B = C/G/T,V = A/C/G, H = A/C/T,D = A/G/T.