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Table 12 Identification of DNA motifs in CUX1 binding sites without the ATCRATconsensus

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Motif Reverse complement E-Value Transcription factors
DTATTTW WAAATAH 3.80E-35 -
CYCCRCCC GGGYGGRG 4.60E-34 Klf4, Klf7, Sp1, Sp4, Zfp281, Zfp740, Egr1
CAYTTCY RGAARTG 1.50E-26 Gabpa, Stat1
CACASAS STSTGTG 3.20E-23 Runx1
DGGAAA TTTCCH 5.00E-22 Stat1, Nfatc2, Rela, Rel, Fev
CCRCCDCC GGHGGYGG 6.40E-19 -
GSAGAGR YCTCTSC 3.90E-17 -
CHGCAGC GCTGCDG 1.30E-16 Myf, Ascl2
CATTTWM KWAAATG 2.90E-26 -
DTTTCTS SAGAAAH 1.70E-13 -
  1. 10 Most enriched DNA motifs found in CUX1 binding sites that do notcontain the ATCRAT CUX1 consensus. The DNA sequences considered inthis analysis correspond to the entire regions bound by CUX1 asdefined in the microarray. The size of bound regions varies from 149to 949 bp (95th percentile) and is 477 bp onaverage. Proteins with DNA binding motifs highly similar to themotifs are listed in the rightmost column.