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Table 14 Identification of DNA motifs close to CUX1 binding sites without theATCRAT consensus

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Entry

Motif

Reverse complement

E-Value

Match in Table13

Factors

1

CTGTARTC

GAYTACAG

3.9E-170

Entry 2

-

2

AAAAWAMA

TKTWTTTT

6.6E-170

Entry 4

Srf, Elf3, Tcfap2e

3

CMGCCTCC

GGAGGCKG

1.7E-160

Entry 1

-

4

AGTAGCTG

CAGCTACT

6.2E-120

Entry 6

-

5

CTCCWSCC

GGSWGGAG

2.3E-116

Entry 9

-

6

GCRGTGR

YCACYGC

2.6E-109

Entry 5

Zbtb3

7

CCMCRCCC

GGGYGKGG

1.4E-104

-

Klf4, Klf7, Sp1, Sp4

8

AAATTAGC

GCTAATTT

2.4E-93

-

Pdx1

9

GTAGAGAY

RTCTCTAC

2.0E-90

-

-

10

AAAGTGCT

AGCACTTT

2.0E-75

Entry 10

-

  1. 10 Most enriched DNA motifs found within the 500 bp regions oneither side of CUX1 binding sites that do not contain the ATCRATCUX1 Consensus. Column 5 lists Table 13entries whose motifs are very similar (max. 1 mismatch). Proteinswith DNA binding motifs highly similar to the motifs are listed inthe rightmost column.
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BMC Genomics

ISSN: 1471-2164

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