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Table 14 Identification of DNA motifs close to CUX1 binding sites without theATCRAT consensus

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Entry Motif Reverse complement E-Value Match in Table13 Factors
1 CTGTARTC GAYTACAG 3.9E-170 Entry 2 -
2 AAAAWAMA TKTWTTTT 6.6E-170 Entry 4 Srf, Elf3, Tcfap2e
3 CMGCCTCC GGAGGCKG 1.7E-160 Entry 1 -
4 AGTAGCTG CAGCTACT 6.2E-120 Entry 6 -
5 CTCCWSCC GGSWGGAG 2.3E-116 Entry 9 -
6 GCRGTGR YCACYGC 2.6E-109 Entry 5 Zbtb3
7 CCMCRCCC GGGYGKGG 1.4E-104 - Klf4, Klf7, Sp1, Sp4
8 AAATTAGC GCTAATTT 2.4E-93 - Pdx1
9 GTAGAGAY RTCTCTAC 2.0E-90 - -
10 AAAGTGCT AGCACTTT 2.0E-75 Entry 10 -
  1. 10 Most enriched DNA motifs found within the 500 bp regions oneither side of CUX1 binding sites that do not contain the ATCRATCUX1 Consensus. Column 5 lists Table 13entries whose motifs are very similar (max. 1 mismatch). Proteinswith DNA binding motifs highly similar to the motifs are listed inthe rightmost column.